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Started by upstream project "BIOFORMATS-test-repo" build number 197 originally caused by: Started by upstream project "Trigger" build number 221 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins17212197917621395744.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_31167_merge_ci -v /test/idr/repos/curated/specs:/data -v /test/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:49:50,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:49:50,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:49:50,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:49:50,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:49:50,615 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:49:50,616 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:49:50,616 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:49:50,616 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:49:50,617 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:49:50,618 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:49:50,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 526 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-23 01:49:50,631] [main] java.version = 1.8.0_342 [testng] 01:49:50,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:49:50,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:50,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-23_01-49-50.log] [testng] 01:49:50,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-23 01:49:50,861] [main] testng.directory = /data [testng] [2024-09-23 01:49:50,862] [main] testng.configDirectory = /config [testng] [2024-09-23 01:49:50,902] [main] testng.multiplier = 1.0 [testng] [2024-09-23 01:49:50,903] [main] testng.in-memory = false [testng] [2024-09-23 01:49:50,904] [main] testng.allow-missing = false [testng] [2024-09-23 01:49:50,904] [main] user.language = fr [testng] [2024-09-23 01:49:50,905] [main] user.country = FR [testng] [2024-09-23 01:49:50,905] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-23 01:50:02,936] [main] ---------------------------------------- [testng] [2024-09-23 01:50:02,936] [main] Total files: 226 [testng] [2024-09-23 01:50:02,936] [main] Scan time: 12.031 s (53 ms/file) [testng] [2024-09-23 01:50:02,936] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-23 01:50:11,997] [pool-1-thread-1] Initializing /data/fluoview/SpineAnimation.avi: [testng] 01:50:11,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:50:11,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:11,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-23_01-50-11.log] [testng] 01:50:11,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b795935 - End of configuration. [testng] [2024-09-23 01:50:12,041] [pool-1-thread-12] Initializing /data/iplab/Color Image.IPL: [testng] 01:50:12,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:50:12,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:12,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-23_01-50-12.log] [testng] 01:50:12,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27b6ab34 - End of configuration. [testng] [2024-09-23 01:50:12,059] [pool-1-thread-11] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 01:50:12,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:50:12,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:12,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-23_01-50-12.log] [testng] 01:50:12,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27114d31 - End of configuration. [testng] [2024-09-23 01:50:12,144] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] 01:50:12,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:50:12,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:12,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-23_01-50-12.log] [testng] 01:50:12,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d62de15 - End of configuration. [testng] [2024-09-23 01:50:12,159] [pool-1-thread-9] Initializing /data/fluoview/SpineAnimation.tif: [testng] 01:50:12,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:50:12,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:12,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-23_01-50-12.log] [testng] 01:50:12,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32a66579 - End of configuration. [testng] [2024-09-23 01:50:12,242] [pool-1-thread-8] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:50:12,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:50:12,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:12,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-23_01-50-12.log] [testng] 01:50:12,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42eef7a5 - End of configuration. [testng] [2024-09-23 01:50:12,265] [pool-1-thread-7] Initializing /data/iplab/3t3 Cell.IPL: [testng] 01:50:12,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:50:12,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:12,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-23_01-50-12.log] [testng] 01:50:12,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@261342e - End of configuration. [testng] [2024-09-23 01:50:12,276] [pool-1-thread-6] Initializing /data/iplab/Color Histology.IPL: [testng] 01:50:12,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:50:12,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:12,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-23_01-50-12.log] [testng] 01:50:12,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5066403c - End of configuration. [testng] [2024-09-23 01:50:12,289] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:50:12,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:50:12,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:12,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-23_01-50-12.log] [testng] 01:50:12,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1307a64d - End of configuration. [testng] [2024-09-23 01:50:12,401] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] 01:50:12,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:50:12,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:12,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-23_01-50-12.log] [testng] 01:50:12,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26067d5b - End of configuration. [testng] [2024-09-23 01:50:12,413] [pool-1-thread-3] Initializing /data/iplab/Actin.IPL: [testng] 01:50:12,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:50:12,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:12,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-23_01-50-12.log] [testng] 01:50:12,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ca6fbce - End of configuration. [testng] [2024-09-23 01:50:12,422] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 01:50:12,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:50:12,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:12,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-23_01-50-12.log] [testng] 01:50:12,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@447910ab - End of configuration. [testng] [2024-09-23 01:50:14,871] [pool-1-thread-3] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-09-23 01:50:14,888] [pool-1-thread-10] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-09-23 01:50:14,934] [pool-1-thread-2] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-09-23 01:50:14,952] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-09-23 01:50:15,021] [pool-1-thread-12] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] [2024-09-23 01:50:15,208] [pool-1-thread-4] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-09-23 01:50:15,215] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-09-23 01:50:15,218] [pool-1-thread-1] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-09-23 01:50:15,228] [pool-1-thread-8] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-09-23 01:50:15,235] [pool-1-thread-11] Initializing /data/iplab/16Bit XRay.IPL: [testng] [2024-09-23 01:50:15,240] [pool-1-thread-9] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-09-23 01:50:15,806] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] [2024-09-23 01:50:15,828] [pool-1-thread-11] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-09-23 01:50:15,890] [pool-1-thread-3] Initializing /data/fluoview/Sample_XT.tif: [testng] [2024-09-23 01:50:16,119] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-09-23 01:50:16,191] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 34 seconds Finished: SUCCESS