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Started by upstream project "BIOFORMATS-test-repo" build number 197 originally caused by: Started by upstream project "Trigger" build number 221 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5530111833566243046.sh + '[' afi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_31221_merge_ci -v /test/idr/repos/curated/afi:/data -v /test/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:33:03,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:33:04,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:33:04,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:33:04,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:33:04,213 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:33:04,214 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:33:04,214 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:33:04,215 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:33:04,215 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:33:04,216 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:33:04,216 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 720 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-23 02:33:04,229] [main] java.version = 1.8.0_342 [testng] 02:33:04,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:33:04,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:04,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-23_02-33-04.log] [testng] 02:33:04,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-23 02:33:04,392] [main] testng.directory = /data [testng] [2024-09-23 02:33:04,393] [main] testng.configDirectory = /config [testng] [2024-09-23 02:33:04,498] [main] testng.multiplier = 1.0 [testng] [2024-09-23 02:33:04,499] [main] testng.in-memory = false [testng] [2024-09-23 02:33:04,499] [main] testng.allow-missing = false [testng] [2024-09-23 02:33:04,499] [main] user.language = fr [testng] [2024-09-23 02:33:04,499] [main] user.country = FR [testng] [2024-09-23 02:33:04,499] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-23 02:33:05,534] [main] ---------------------------------------- [testng] [2024-09-23 02:33:05,534] [main] Total files: 16 [testng] [2024-09-23 02:33:05,534] [main] Scan time: 1.035 s (64 ms/file) [testng] [2024-09-23 02:33:05,534] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-23 02:33:14,820] [pool-1-thread-1] Initializing /data/samples/5365.afi: [testng] 02:33:14,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:33:14,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:14,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-23_02-33-14.log] [testng] 02:33:14,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29921912 - End of configuration. [testng] [2024-09-23 02:33:14,929] [pool-1-thread-12] Initializing /data/samples/5440.afi: [testng] 02:33:14,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:33:14,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:14,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-23_02-33-14.log] [testng] 02:33:14,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d5143dc - End of configuration. [testng] [2024-09-23 02:33:15,134] [pool-1-thread-11] Initializing /data/samples/5383.afi: [testng] 02:33:15,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:33:15,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:15,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-23_02-33-15.log] [testng] 02:33:15,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48d59072 - End of configuration. [testng] [2024-09-23 02:33:15,234] [pool-1-thread-10] Initializing /data/samples/5347.afi: [testng] 02:33:15,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:33:15,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:15,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-23_02-33-15.log] [testng] 02:33:15,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f893340 - End of configuration. [testng] [2024-09-23 02:33:15,340] [pool-1-thread-9] Initializing /data/samples/5351.afi: [testng] 02:33:15,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:33:15,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:15,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-23_02-33-15.log] [testng] 02:33:15,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fc9dff9 - End of configuration. [testng] [2024-09-23 02:33:15,485] [pool-1-thread-8] Initializing /data/samples/5358.afi: [testng] 02:33:15,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:33:15,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:15,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-23_02-33-15.log] [testng] 02:33:15,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3affc213 - End of configuration. [testng] [2024-09-23 02:33:15,584] [pool-1-thread-7] Initializing /data/samples/5400.afi: [testng] 02:33:15,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:33:15,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:15,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-23_02-33-15.log] [testng] 02:33:15,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51b18be3 - End of configuration. [testng] [2024-09-23 02:33:15,865] [pool-1-thread-6] Initializing /data/samples/5414.afi: [testng] 02:33:15,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:33:15,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:15,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-23_02-33-15.log] [testng] 02:33:15,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ba608de - End of configuration. [testng] [2024-09-23 02:33:16,019] [pool-1-thread-5] Initializing /data/samples/5387.afi: [testng] 02:33:16,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:33:16,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:16,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-23_02-33-16.log] [testng] 02:33:16,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274ba455 - End of configuration. [testng] [2024-09-23 02:33:16,134] [pool-1-thread-4] Initializing /data/samples/5306.afi: [testng] 02:33:16,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:33:16,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:16,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-23_02-33-16.log] [testng] 02:33:16,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f37f69a - End of configuration. [testng] [2024-09-23 02:33:16,209] [pool-1-thread-3] Initializing /data/samples/5343.afi: [testng] 02:33:16,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:33:16,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:16,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-23_02-33-16.log] [testng] 02:33:16,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@397f50a0 - End of configuration. [testng] [2024-09-23 02:33:16,318] [pool-1-thread-2] Initializing /data/samples/5339.afi: [testng] 02:33:16,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:33:16,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:16,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-23_02-33-16.log] [testng] 02:33:16,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@353f7d86 - End of configuration. [testng] [2024-09-23 02:34:04,041] [pool-1-thread-7] Initializing /data/samples/5407.afi: [testng] [2024-09-23 02:34:05,115] [pool-1-thread-12] Initializing /data/samples/5371.afi: [testng] [2024-09-23 02:34:06,565] [pool-1-thread-10] Initializing /data/samples/5446.afi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 50 seconds Finished: SUCCESS