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Started by upstream project "BIOFORMATS-test-repo" build number 197 originally caused by: Started by upstream project "Trigger" build number 221 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins14386360606252524860.sh + '[' avi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_31226_merge_ci -v /test/idr/repos/curated/avi:/data -v /test/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:45:37,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:45:37,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:45:37,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:45:37,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:45:37,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:45:37,954 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:45:37,954 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:45:37,954 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:45:37,954 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:45:37,955 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:45:37,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 440 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-23 02:45:37,966] [main] java.version = 1.8.0_342 [testng] 02:45:37,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:45:37,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:38,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-23_02-45-38.log] [testng] 02:45:38,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-23 02:45:38,100] [main] testng.directory = /data [testng] [2024-09-23 02:45:38,100] [main] testng.configDirectory = /config [testng] [2024-09-23 02:45:38,149] [main] testng.multiplier = 1.0 [testng] [2024-09-23 02:45:38,149] [main] testng.in-memory = false [testng] [2024-09-23 02:45:38,149] [main] testng.allow-missing = false [testng] [2024-09-23 02:45:38,150] [main] user.language = fr [testng] [2024-09-23 02:45:38,150] [main] user.country = FR [testng] [2024-09-23 02:45:38,150] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-23 02:45:39,528] [main] ---------------------------------------- [testng] [2024-09-23 02:45:39,528] [main] Total files: 40 [testng] [2024-09-23 02:45:39,528] [main] Scan time: 1.378 s (34 ms/file) [testng] [2024-09-23 02:45:39,528] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-23 02:49:28,479] [pool-1-thread-1] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 02:49:28,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:49:28,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-23_02-49-28.log] [testng] 02:49:28,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3375659d - End of configuration. [testng] [2024-09-23 02:49:28,551] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 02:49:28,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:49:28,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-23_02-49-28.log] [testng] 02:49:28,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44756d80 - End of configuration. [testng] [2024-09-23 02:49:28,567] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] 02:49:28,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:49:28,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-23_02-49-28.log] [testng] 02:49:28,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5288cacd - End of configuration. [testng] [2024-09-23 02:49:28,586] [pool-1-thread-10] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] 02:49:28,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:49:28,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,587 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-23_02-49-28.log] [testng] 02:49:28,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45318e8e - End of configuration. [testng] [2024-09-23 02:49:28,654] [pool-1-thread-9] Initializing /data/william/worm.avi: [testng] 02:49:28,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:49:28,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-23_02-49-28.log] [testng] 02:49:28,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a0926e6 - End of configuration. [testng] [2024-09-23 02:49:28,667] [pool-1-thread-8] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 02:49:28,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:49:28,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-23_02-49-28.log] [testng] 02:49:28,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f1986aa - End of configuration. [testng] [2024-09-23 02:49:28,685] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 02:49:28,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:49:28,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-23_02-49-28.log] [testng] 02:49:28,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5395d14b - End of configuration. [testng] [2024-09-23 02:49:28,715] [pool-1-thread-6] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] 02:49:28,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:49:28,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-23_02-49-28.log] [testng] 02:49:28,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@619ee1d9 - End of configuration. [testng] [2024-09-23 02:49:28,756] [pool-1-thread-5] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] 02:49:28,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:49:28,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-23_02-49-28.log] [testng] 02:49:28,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@540bdbec - End of configuration. [testng] [2024-09-23 02:49:28,788] [pool-1-thread-4] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 02:49:28,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:49:28,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-23_02-49-28.log] [testng] 02:49:28,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a0f2d3 - End of configuration. [testng] [2024-09-23 02:49:28,829] [pool-1-thread-3] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 02:49:28,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:49:28,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-23_02-49-28.log] [testng] 02:49:28,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fe294e0 - End of configuration. [testng] [2024-09-23 02:49:28,878] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] 02:49:28,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:49:28,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:28,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-23_02-49-28.log] [testng] 02:49:28,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@304fdcf5 - End of configuration. [testng] [2024-09-23 02:49:30,655] [pool-1-thread-12] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-09-23 02:49:30,683] [pool-1-thread-8] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-09-23 02:50:07,262] [pool-1-thread-9] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-09-23 02:50:07,451] [pool-1-thread-4] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] [2024-09-23 02:50:07,501] [pool-1-thread-11] Initializing /data/ascb/TIRF.avi: [testng] [2024-09-23 02:50:07,832] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-09-23 02:50:07,873] [pool-1-thread-7] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] [2024-09-23 02:50:07,946] [pool-1-thread-2] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-09-23 02:50:07,987] [pool-1-thread-5] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-09-23 02:50:08,031] [pool-1-thread-3] Initializing /data/kurt/40x_6um_2.avi: [testng] [2024-09-23 02:50:08,175] [pool-1-thread-1] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-09-23 02:50:08,296] [pool-1-thread-10] Initializing /data/simon/24_bit_problem.avi: [testng] [2024-09-23 02:50:09,112] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-09-23 02:50:09,317] [pool-1-thread-5] Initializing /data/kurt/40x_6um.avi: [testng] [2024-09-23 02:50:09,766] [pool-1-thread-7] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-09-23 02:50:09,837] [pool-1-thread-6] Initializing /data/kurt/63x_6um.avi: [testng] [2024-09-23 02:50:09,994] [pool-1-thread-1] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-09-23 02:50:10,068] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2024-09-23 02:50:10,250] [pool-1-thread-10] Initializing /data/chris/APZ04_009.avi: [testng] [2024-09-23 02:50:19,506] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-09-23 02:50:19,530] [pool-1-thread-11] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-09-23 02:50:19,703] [pool-1-thread-4] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-09-23 02:50:19,865] [pool-1-thread-7] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-09-23 02:50:22,444] [pool-1-thread-3] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-09-23 02:50:22,854] [pool-1-thread-9] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-09-23 02:50:22,909] [pool-1-thread-1] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 58 seconds Finished: SUCCESS