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Started by upstream project "BIOFORMATS-test-repo" build number 25 originally caused by: Started by upstream project "Trigger" build number 28 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins8913764543249635005.sh + '[' targa = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_3126_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:26:56,253 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:26:56,255 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:26:56,255 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:56,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:56,256 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:26:56,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:26:56,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:26:56,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:56,258 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:56,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:26:56,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:26:56,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:26:56,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:26:56,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:26:56,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:26:56,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:26:56,490 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:26:56,490 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:26:56,490 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:26:56,490 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:26:56,491 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:26:56,491 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:26:56,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 234 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-06 01:26:56,502] [main] java.version = 11.0.16 [testng] 01:26:56,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:26:56,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:56,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-06_01-26-56.log] [testng] 01:26:56,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-04-06 01:26:56,561] [main] testng.directory = /data [testng] [2024-04-06 01:26:56,561] [main] testng.configDirectory = /config [testng] [2024-04-06 01:26:56,573] [main] testng.multiplier = 1.0 [testng] [2024-04-06 01:26:56,575] [main] testng.in-memory = false [testng] [2024-04-06 01:26:56,575] [main] testng.allow-missing = false [testng] [2024-04-06 01:26:56,575] [main] user.language = en [testng] [2024-04-06 01:26:56,575] [main] user.country = ${user.country} [testng] [2024-04-06 01:26:56,575] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-06 01:26:56,980] [main] ---------------------------------------- [testng] [2024-04-06 01:26:56,980] [main] Total files: 21 [testng] [2024-04-06 01:26:56,980] [main] Scan time: 0.405 s (19 ms/file) [testng] [2024-04-06 01:26:56,981] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-06 01:26:57,757] [pool-1-thread-1] Initializing /data/samples/XING_B32.TGA: [testng] 01:26:57,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:26:57,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-06_01-26-57.log] [testng] 01:26:57,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50831c64 - End of configuration. [testng] [2024-04-06 01:26:57,779] [pool-1-thread-12] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:26:57,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:26:57,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-06_01-26-57.log] [testng] 01:26:57,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a3f62a - End of configuration. [testng] [2024-04-06 01:26:57,833] [pool-1-thread-11] Initializing /data/samples/XING_T32.TGA: [testng] 01:26:57,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:26:57,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-06_01-26-57.log] [testng] 01:26:57,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21479c7f - End of configuration. [testng] [2024-04-06 01:26:57,846] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 01:26:57,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:26:57,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-06_01-26-57.log] [testng] 01:26:57,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fbede5e - End of configuration. [testng] [2024-04-06 01:26:57,859] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:26:57,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:26:57,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-06_01-26-57.log] [testng] 01:26:57,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a044159 - End of configuration. [testng] [2024-04-06 01:26:57,869] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:26:57,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:26:57,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-06_01-26-57.log] [testng] 01:26:57,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cc0e59b - End of configuration. [testng] [2024-04-06 01:26:57,879] [pool-1-thread-7] Initializing /data/samples/UTC16.TGA: [testng] 01:26:57,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:26:57,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-06_01-26-57.log] [testng] 01:26:57,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ade25d9 - End of configuration. [testng] [2024-04-06 01:26:57,890] [pool-1-thread-6] Initializing /data/samples/UTC24.TGA: [testng] 01:26:57,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:26:57,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-06_01-26-57.log] [testng] 01:26:57,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2613d2e - End of configuration. [testng] [2024-04-06 01:26:57,903] [pool-1-thread-5] Initializing /data/samples/MARBLES.TGA: [testng] 01:26:57,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:26:57,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-06_01-26-57.log] [testng] 01:26:57,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@538f147d - End of configuration. [testng] [2024-04-06 01:26:57,925] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:26:57,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:26:57,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-06_01-26-57.log] [testng] 01:26:57,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a651a84 - End of configuration. [testng] [2024-04-06 01:26:57,939] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA: [testng] 01:26:57,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:26:57,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-06_01-26-57.log] [testng] 01:26:57,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66aebe46 - End of configuration. [testng] [2024-04-06 01:26:57,949] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA: [testng] 01:26:57,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:26:57,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:57,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-06_01-26-57.log] [testng] 01:26:57,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30240732 - End of configuration. [testng] [2024-04-06 01:26:59,494] [pool-1-thread-4] Initializing /data/samples/XING_B24.TGA: [testng] [2024-04-06 01:26:59,504] [pool-1-thread-9] Initializing /data/samples/UBW8.TGA: [testng] [2024-04-06 01:26:59,512] [pool-1-thread-6] Initializing /data/samples/XING_T24.TGA: [testng] [2024-04-06 01:26:59,518] [pool-1-thread-8] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-04-06 01:26:59,524] [pool-1-thread-7] Initializing /data/samples/UCM8.TGA: [testng] [2024-04-06 01:26:59,530] [pool-1-thread-11] Initializing /data/samples/CTC24.TGA: [testng] [2024-04-06 01:26:59,536] [pool-1-thread-3] Initializing /data/samples/CTC16.TGA: [testng] [2024-04-06 01:26:59,543] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA: [testng] [2024-04-06 01:26:59,550] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 seconds Finished: SUCCESS