Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 198
originally caused by:
 Started by upstream project "Trigger" build number 222
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins3485601067466988407.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_31347_merge_ci -v /test/idr/repos/curated/bigtiff:/data -v /test/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:54:37,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:54:37,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:54:37,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:54:37,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:54:37,655 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:54:37,655 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:54:37,655 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:54:37,656 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:54:37,656 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration.
   [testng] 01:54:37,657 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point
   [testng] 01:54:37,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 430 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-09-24 01:54:37,673] [main] java.version = 11.0.16
   [testng] 01:54:37,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:54:37,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:37,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-24_01-54-37.log]
   [testng] 01:54:37,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-09-24 01:54:37,926] [main] testng.directory = /data
   [testng] [2024-09-24 01:54:37,926] [main] testng.configDirectory = /config
   [testng] [2024-09-24 01:54:37,974] [main] testng.multiplier = 1.0
   [testng] [2024-09-24 01:54:37,977] [main] testng.in-memory = false
   [testng] [2024-09-24 01:54:37,978] [main] testng.allow-missing = false
   [testng] [2024-09-24 01:54:37,978] [main] user.language = en
   [testng] [2024-09-24 01:54:37,978] [main] user.country = ${user.country}
   [testng] [2024-09-24 01:54:37,978] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-09-24 01:54:39,093] [main] ----------------------------------------
   [testng] [2024-09-24 01:54:39,093] [main] Total files: 14
   [testng] [2024-09-24 01:54:39,094] [main] Scan time: 1.114 s (79 ms/file)
   [testng] [2024-09-24 01:54:39,094] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 13 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-09-24 01:54:52,608] [pool-1-thread-1] Initializing /data/carlsen/Olympics8-lzw.tif: 
   [testng] 01:54:52,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:54:52,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:52,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-24_01-54-52.log]
   [testng] 01:54:52,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5831e4f3 - End of configuration.
   [testng] [2024-09-24 01:54:52,790] [pool-1-thread-12] Initializing /data/samples/Classic.tif: 
   [testng] 01:54:52,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:54:52,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:52,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-24_01-54-52.log]
   [testng] 01:54:52,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cc28777 - End of configuration.
   [testng] [2024-09-24 01:54:52,831] [pool-1-thread-11] Initializing /data/samples/BigTIFFSubIFD8.tif: 
   [testng] 01:54:52,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:54:52,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:52,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-24_01-54-52.log]
   [testng] 01:54:52,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4437c7c6 - End of configuration.
   [testng] [2024-09-24 01:54:52,862] [pool-1-thread-10] Initializing /data/samples/BigTIFFMotorola.tif: 
   [testng] 01:54:52,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:54:52,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:52,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-24_01-54-52.log]
   [testng] 01:54:52,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44d0ac9e - End of configuration.
   [testng] [2024-09-24 01:54:52,895] [pool-1-thread-9] Initializing /data/samples/BigTIFFLong.tif: 
   [testng] 01:54:52,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:54:52,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:52,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-24_01-54-52.log]
   [testng] 01:54:52,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63eee6d - End of configuration.
   [testng] [2024-09-24 01:54:52,935] [pool-1-thread-8] Initializing /data/colin/7S59P8I1_F00000012.btf: 
   [testng] 01:54:52,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:54:52,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:52,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-24_01-54-52.log]
   [testng] 01:54:52,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@118e9556 - End of configuration.
   [testng] [2024-09-24 01:54:55,619] [pool-1-thread-7] Initializing /data/samples/BigTIFF.tif: 
   [testng] 01:54:55,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:54:55,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:55,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-24_01-54-55.log]
   [testng] 01:54:55,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d25c260 - End of configuration.
   [testng] [2024-09-24 01:54:55,648] [pool-1-thread-6] Initializing /data/samples/BigTIFFLong8.tif: 
   [testng] 01:54:55,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:54:55,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:55,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-24_01-54-55.log]
   [testng] 01:54:55,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@376902e6 - End of configuration.
   [testng] [2024-09-24 01:54:55,673] [pool-1-thread-5] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif: 
   [testng] 01:54:55,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:54:55,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:55,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-24_01-54-55.log]
   [testng] 01:54:55,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53fe7d6 - End of configuration.
   [testng] [2024-09-24 01:54:55,695] [pool-1-thread-4] Initializing /data/carlsen/Olympics8.tif: 
   [testng] 01:54:55,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:54:55,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:55,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-24_01-54-55.log]
   [testng] 01:54:55,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@191d818a - End of configuration.
   [testng] [2024-09-24 01:54:55,740] [pool-1-thread-3] Initializing /data/samples/BigTIFFSubIFD4.tif: 
   [testng] 01:54:55,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:54:55,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:55,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-24_01-54-55.log]
   [testng] 01:54:55,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4578b14a - End of configuration.
   [testng] [2024-09-24 01:54:55,769] [pool-1-thread-2] Initializing /data/samples/BigTIFFLong8Tiles.tif: 
   [testng] 01:54:55,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:54:55,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:54:55,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-24_01-54-55.log]
   [testng] 01:54:55,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d31d19f - End of configuration.
   [testng] [2024-09-24 01:54:58,015] [pool-1-thread-12] Initializing /data/carlsen/Olympics8-raw.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 689, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 53 seconds
Finished: SUCCESS