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Started by upstream project "BIOFORMATS-test-repo" build number 198 originally caused by: Started by upstream project "Trigger" build number 222 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins13534436845244397170.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_31438_merge_ci -v /test/idr/repos/curated/biorad-gel:/data -v /test/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 03:14:04,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:14:04,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:14:04,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:14:04,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:14:04,429 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:14:04,430 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:14:04,430 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:14:04,430 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:14:04,430 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 03:14:04,431 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 03:14:04,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 564 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-24 03:14:04,442] [main] java.version = 11.0.16 [testng] 03:14:04,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:14:04,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:04,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-24_03-14-04.log] [testng] 03:14:04,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-24 03:14:04,561] [main] testng.directory = /data [testng] [2024-09-24 03:14:04,561] [main] testng.configDirectory = /config [testng] [2024-09-24 03:14:04,626] [main] testng.multiplier = 1.0 [testng] [2024-09-24 03:14:04,628] [main] testng.in-memory = false [testng] [2024-09-24 03:14:04,628] [main] testng.allow-missing = false [testng] [2024-09-24 03:14:04,628] [main] user.language = en [testng] [2024-09-24 03:14:04,628] [main] user.country = ${user.country} [testng] [2024-09-24 03:14:04,628] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-24 03:14:06,232] [main] ---------------------------------------- [testng] [2024-09-24 03:14:06,232] [main] Total files: 32 [testng] [2024-09-24 03:14:06,232] [main] Scan time: 1.604 s (50 ms/file) [testng] [2024-09-24 03:14:06,232] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-24 03:14:10,118] [pool-1-thread-1] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 03:14:10,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:14:10,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-24_03-14-10.log] [testng] 03:14:10,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d31ad7e - End of configuration. [testng] [2024-09-24 03:14:10,161] [pool-1-thread-12] Initializing /data/qa-16880/c-src v7.1sc: [testng] 03:14:10,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:14:10,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-24_03-14-10.log] [testng] 03:14:10,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@796b6726 - End of configuration. [testng] [2024-09-24 03:14:10,182] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] 03:14:10,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:14:10,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-24_03-14-10.log] [testng] 03:14:10,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bb8c5d4 - End of configuration. [testng] [2024-09-24 03:14:10,242] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] 03:14:10,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:14:10,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-24_03-14-10.log] [testng] 03:14:10,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@432822e0 - End of configuration. [testng] [2024-09-24 03:14:10,269] [pool-1-thread-9] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] 03:14:10,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:14:10,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-24_03-14-10.log] [testng] 03:14:10,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@230fd6c3 - End of configuration. [testng] [2024-09-24 03:14:10,293] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] 03:14:10,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:14:10,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-24_03-14-10.log] [testng] 03:14:10,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@736114c1 - End of configuration. [testng] [2024-09-24 03:14:10,325] [pool-1-thread-7] Initializing /data/geert/bad example1.1sc.jpg: [testng] 03:14:10,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:14:10,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-24_03-14-10.log] [testng] 03:14:10,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e72595e - End of configuration. [testng] [2024-09-24 03:14:10,362] [pool-1-thread-6] Initializing /data/geert/bad example1.1sc: [testng] 03:14:10,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:14:10,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-24_03-14-10.log] [testng] 03:14:10,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22443920 - End of configuration. [testng] [2024-09-24 03:14:10,396] [pool-1-thread-5] Initializing /data/david/Opened in imageJ.tiff: [testng] 03:14:10,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:14:10,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-24_03-14-10.log] [testng] 03:14:10,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f61576c - End of configuration. [testng] [2024-09-24 03:14:10,429] [pool-1-thread-4] Initializing /data/qa-29469/good.1sc: [testng] 03:14:10,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:14:10,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-24_03-14-10.log] [testng] 03:14:10,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75459243 - End of configuration. [testng] [2024-09-24 03:14:10,461] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] 03:14:10,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:14:10,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-24_03-14-10.log] [testng] 03:14:10,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60e8ee3f - End of configuration. [testng] [2024-09-24 03:14:10,513] [pool-1-thread-2] Initializing /data/qa-29469/bad2.1sc: [testng] 03:14:10,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:14:10,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:10,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-24_03-14-10.log] [testng] 03:14:10,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dd35748 - End of configuration. [testng] [2024-09-24 03:14:12,568] [pool-1-thread-2] Initializing /data/keith/PF020328saur v3.1sc: [testng] [2024-09-24 03:14:12,577] [pool-1-thread-12] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-09-24 03:14:12,607] [pool-1-thread-4] Initializing /data/samples/Criterion.1sc: [testng] [2024-09-24 03:14:12,628] [pool-1-thread-9] Initializing /data/keith/pg020410saur3.1sc: [testng] [2024-09-24 03:14:12,641] [pool-1-thread-10] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-09-24 03:14:12,668] [pool-1-thread-8] Initializing /data/keith/test2.1sc: [testng] [2024-09-24 03:14:12,683] [pool-1-thread-5] Initializing /data/geert/bad example1.jpg: [testng] [2024-09-24 03:14:12,718] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-09-24 03:14:12,742] [pool-1-thread-7] Initializing /data/qa-29459/bad.jpg: [testng] [2024-09-24 03:14:12,754] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-09-24 03:14:12,805] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-09-24 03:14:12,850] [pool-1-thread-11] Initializing /data/keith/test.1sc: [testng] [2024-09-24 03:14:13,116] [pool-1-thread-9] Initializing /data/qa-29459/bad.1sc: [testng] [2024-09-24 03:14:13,234] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2024-09-24 03:14:13,285] [pool-1-thread-8] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-09-24 03:14:13,439] [pool-1-thread-7] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2024-09-24 03:14:13,516] [pool-1-thread-11] Initializing /data/geert/good example1.1sc: [testng] [2024-09-24 03:14:13,650] [pool-1-thread-10] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-09-24 03:14:13,663] [pool-1-thread-12] Initializing /data/samples/imagesEight.1sc: [testng] [2024-09-24 03:14:13,707] [pool-1-thread-8] Initializing /data/adrian/test_img.1sc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 seconds Finished: SUCCESS