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Started by upstream project "BIOFORMATS-test-repo" build number 200 originally caused by: Started by upstream project "Trigger" build number 225 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15279562383899446019.sh + '[' specs = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_31659_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 06:28:22,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:28:22,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 06:28:22,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:28:22,039 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:28:22,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:28:22,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:28:22,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:28:22,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:28:22,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:28:22,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:28:22,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:28:22,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:28:22,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:28:22,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:28:22,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:28:22,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:28:22,252 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:28:22,253 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:28:22,253 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:28:22,253 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:28:22,253 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 06:28:22,254 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 06:28:22,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 214 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-26 06:28:22,263] [main] java.version = 21 [testng] 06:28:22,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:28:22,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:22,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-26_06-28-22.log] [testng] 06:28:22,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-26 06:28:22,320] [main] testng.directory = /data [testng] [2024-09-26 06:28:22,320] [main] testng.configDirectory = /config [testng] [2024-09-26 06:28:22,333] [main] testng.multiplier = 1.0 [testng] [2024-09-26 06:28:22,333] [main] testng.in-memory = false [testng] [2024-09-26 06:28:22,333] [main] testng.allow-missing = false [testng] [2024-09-26 06:28:22,333] [main] user.language = en [testng] [2024-09-26 06:28:22,334] [main] user.country = ${user.country} [testng] [2024-09-26 06:28:22,334] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-26 06:31:37,275] [main] ---------------------------------------- [testng] [2024-09-26 06:31:37,275] [main] Total files: 226 [testng] [2024-09-26 06:31:37,275] [main] Scan time: 194.941 s (862 ms/file) [testng] [2024-09-26 06:31:37,276] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-26 06:33:20,728] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] 06:33:20,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:33:20,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:20,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-26_06-33-20.log] [testng] 06:33:20,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53e97f8d - End of configuration. [testng] [2024-09-26 06:33:20,790] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 06:33:20,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:33:20,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:20,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-26_06-33-20.log] [testng] 06:33:20,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41ac9d44 - End of configuration. [testng] [2024-09-26 06:33:20,970] [pool-1-thread-11] Initializing /data/iplab/Color Image.IPL: [testng] 06:33:20,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:33:20,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:20,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-26_06-33-20.log] [testng] 06:33:20,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@748d93bb - End of configuration. [testng] [2024-09-26 06:33:21,001] [pool-1-thread-10] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 06:33:21,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:33:21,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:21,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-26_06-33-21.log] [testng] 06:33:21,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64b7ea9 - End of configuration. [testng] [2024-09-26 06:33:21,172] [pool-1-thread-9] Initializing /data/iplab/Blend_Dapi.IPL: [testng] 06:33:21,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:33:21,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:21,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-26_06-33-21.log] [testng] 06:33:21,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ee168cb - End of configuration. [testng] [2024-09-26 06:33:21,198] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] 06:33:21,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:33:21,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:21,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-26_06-33-21.log] [testng] 06:33:21,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b25825 - End of configuration. [testng] [2024-09-26 06:33:21,243] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 06:33:21,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:33:21,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:21,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-26_06-33-21.log] [testng] 06:33:21,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67fbeca0 - End of configuration. [testng] [2024-09-26 06:33:21,420] [pool-1-thread-6] Initializing /data/iplab/Color Histology.IPL: [testng] 06:33:21,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:33:21,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:21,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-26_06-33-21.log] [testng] 06:33:21,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10221a1d - End of configuration. [testng] [2024-09-26 06:33:21,442] [pool-1-thread-5] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 06:33:21,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:33:21,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:21,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-26_06-33-21.log] [testng] 06:33:21,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@511e2292 - End of configuration. [testng] [2024-09-26 06:33:21,464] [pool-1-thread-4] Initializing /data/fluoview/Sample_XT.tif: [testng] 06:33:21,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:33:21,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:21,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-26_06-33-21.log] [testng] 06:33:21,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54bd2649 - End of configuration. [testng] [2024-09-26 06:33:21,620] [pool-1-thread-3] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] 06:33:21,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:33:21,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:21,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-26_06-33-21.log] [testng] 06:33:21,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e9ab45e - End of configuration. [testng] [2024-09-26 06:33:21,657] [pool-1-thread-2] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 06:33:21,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:33:21,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:21,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-26_06-33-21.log] [testng] 06:33:21,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f690185 - End of configuration. [testng] [2024-09-26 06:33:23,804] [pool-1-thread-6] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-09-26 06:33:24,072] [pool-1-thread-11] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-09-26 06:33:24,596] [pool-1-thread-3] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] [2024-09-26 06:33:24,986] [pool-1-thread-8] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-09-26 06:33:25,156] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-09-26 06:33:25,643] [pool-1-thread-5] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2024-09-26 06:33:26,063] [pool-1-thread-1] Initializing /data/iplab/Actin.IPL: [testng] [2024-09-26 06:33:26,215] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-09-26 06:33:27,263] [pool-1-thread-7] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-09-26 06:33:27,730] [pool-1-thread-12] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-09-26 06:33:27,801] [pool-1-thread-2] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-09-26 06:33:27,864] [pool-1-thread-4] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-09-26 06:33:27,946] [pool-1-thread-1] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-09-26 06:33:28,940] [pool-1-thread-8] Initializing /data/iplab/16Bit XRay.IPL: [testng] [2024-09-26 06:33:29,029] [pool-1-thread-2] Initializing /data/iplab/Blend_Fitc.IPL: [testng] [2024-09-26 06:33:29,131] [pool-1-thread-12] Initializing /data/iplab/3t3 Cell.IPL: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 13 seconds Finished: SUCCESS