![[Jenkins]](/jenkins/static/695419c3/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 200 originally caused by: Started by upstream project "Trigger" build number 225 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins3760233680903116178.sh + '[' samples = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_31662_merge_ci -v /uod/idr/repos/curated/samples:/data -v /uod/idr-scratch/merge-ci/curated/samples:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 06:33:59,575 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:33:59,576 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 06:33:59,576 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:33:59,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:33:59,577 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:33:59,578 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:33:59,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:33:59,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:33:59,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:33:59,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:33:59,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:33:59,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:33:59,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:33:59,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:33:59,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:33:59,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:33:59,768 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:33:59,768 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:33:59,768 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:33:59,769 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:33:59,769 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 06:33:59,769 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 06:33:59,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-26 06:33:59,778] [main] java.version = 21 [testng] 06:33:59,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:33:59,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:59,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-26_06-33-59.log] [testng] 06:33:59,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-26 06:33:59,826] [main] testng.directory = /data [testng] [2024-09-26 06:33:59,826] [main] testng.configDirectory = /config [testng] [2024-09-26 06:33:59,835] [main] testng.multiplier = 1.0 [testng] [2024-09-26 06:33:59,836] [main] testng.in-memory = false [testng] [2024-09-26 06:33:59,836] [main] testng.allow-missing = false [testng] [2024-09-26 06:33:59,836] [main] user.language = en [testng] [2024-09-26 06:33:59,836] [main] user.country = ${user.country} [testng] [2024-09-26 06:33:59,836] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-26 06:34:34,384] [main] ---------------------------------------- [testng] [2024-09-26 06:34:34,385] [main] Total files: 164 [testng] [2024-09-26 06:34:34,385] [main] Scan time: 34.548 s (210 ms/file) [testng] [2024-09-26 06:34:34,385] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-26 06:35:22,429] [pool-1-thread-1] Initializing /data/openjpeg/FacadeERROPJW.bmp: [testng] 06:35:22,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:35:22,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:22,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-26_06-35-22.log] [testng] 06:35:22,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1676350 - End of configuration. [testng] [2024-09-26 06:35:22,575] [pool-1-thread-12] Initializing /data/ome/tiffany.color.tiff: [testng] 06:35:22,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:35:22,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:22,577 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-26_06-35-22.log] [testng] 06:35:22,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4702ad24 - End of configuration. [testng] [2024-09-26 06:35:24,296] [pool-1-thread-11] Initializing /data/openjpeg/thumb_Bretagne1.jpg: [testng] 06:35:24,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:35:24,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:24,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-26_06-35-24.log] [testng] 06:35:24,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72d7feb9 - End of configuration. [testng] [2024-09-26 06:35:24,426] [pool-1-thread-10] Initializing /data/openjpeg/Facade.bmp: [testng] 06:35:24,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:35:24,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:24,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-26_06-35-24.log] [testng] 06:35:24,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ad0717 - End of configuration. [testng] [2024-09-26 06:35:24,544] [pool-1-thread-9] Initializing /data/sdub/sdub.pattern: [testng] 06:35:24,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:35:24,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:24,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-26_06-35-24.log] [testng] 06:35:24,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5885929d - End of configuration. [testng] [2024-09-26 06:35:34,418] [pool-1-thread-8] Initializing /data/ome/t1_pos1-0_5x.lsm: [testng] 06:35:34,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:35:34,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:34,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-26_06-35-34.log] [testng] 06:35:34,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e02ceca - End of configuration. [testng] [2024-09-26 06:35:35,122] [pool-1-thread-7] Initializing /data/ome/nfat10x3 good2_D12_w2.TIF: [testng] 06:35:35,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:35:35,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:35,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-26_06-35-35.log] [testng] 06:35:35,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377bbd54 - End of configuration. [testng] [2024-09-26 06:35:36,094] [pool-1-thread-6] Initializing /data/openjpeg/FacadeERROPJ.bmp: [testng] 06:35:36,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:35:36,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:36,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-26_06-35-36.log] [testng] 06:35:36,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@90fceca - End of configuration. [testng] [2024-09-26 06:35:36,181] [pool-1-thread-5] Initializing /data/openjpeg/Bretagne2.ppm: [testng] 06:35:36,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:35:36,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:36,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-26_06-35-36.log] [testng] 06:35:36,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e78380 - End of configuration. [testng] [2024-09-26 06:35:36,246] [pool-1-thread-4] Initializing /data/openjpeg/Bretagne1.j2k: [testng] 06:35:36,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:35:36,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:36,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-26_06-35-36.log] [testng] 06:35:36,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48291505 - End of configuration. [testng] [2024-09-26 06:35:36,759] [pool-1-thread-3] Initializing /data/openjpeg/Cevennes2.bmp: [testng] 06:35:36,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:35:36,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:36,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-26_06-35-36.log] [testng] 06:35:36,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31b78629 - End of configuration. [testng] [2024-09-26 06:35:36,850] [pool-1-thread-2] Initializing /data/ome/nfat10x3 good2_D12_w3.TIF: [testng] 06:35:36,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:35:36,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:36,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-26_06-35-36.log] [testng] 06:35:36,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a9894c1 - End of configuration. [testng] [2024-09-26 06:35:40,448] [pool-1-thread-3] Initializing /data/openjpeg/Bretagne1.bmp: [testng] [2024-09-26 06:35:40,988] [pool-1-thread-5] Initializing /data/openjpeg/Cevennes1.bmp: [testng] [2024-09-26 06:35:41,339] [pool-1-thread-11] Initializing /data/openjpeg/Cevennes2.ppm: [testng] [2024-09-26 06:35:41,539] [pool-1-thread-10] Initializing /data/openjpeg/Cevennes1.ppm: [testng] [2024-09-26 06:35:41,628] [pool-1-thread-6] Initializing /data/openjpeg/Bretagne1.ppm: [testng] [2024-09-26 06:35:41,913] [pool-1-thread-1] Initializing /data/openjpeg/thumb_Cevennes1.jpg: [testng] [2024-09-26 06:35:42,664] [pool-1-thread-4] Initializing /data/ome/arwen0205_raw00201.pic: [testng] [2024-09-26 06:35:43,448] [pool-1-thread-3] Initializing /data/ome/PA-SDS-RFP-CenB_w1GFP_t1.stk: [testng] [2024-09-26 06:35:44,418] [pool-1-thread-8] Initializing /data/ome/embryo.lsm: [testng] [2024-09-26 06:35:45,053] [pool-1-thread-7] Initializing /data/10-31 E1/10-31 E1.tif: [testng] [2024-09-26 06:35:46,115] [pool-1-thread-2] Initializing /data/ome/worm.tiff: [testng] [2024-09-26 06:35:47,618] [pool-1-thread-11] Initializing /data/ome/654Atemp.stk: [testng] [2024-09-26 06:35:49,439] [pool-1-thread-12] Initializing /data/openjpeg/Rome.bmp: [testng] [2024-09-26 06:35:49,895] [pool-1-thread-6] Initializing /data/kidney_TFl/kidney_TFl.pattern: [testng] [2024-09-26 06:35:51,557] [pool-1-thread-1] Initializing /data/ome/C1lowmusgfp.lsm: [testng] [2024-09-26 06:35:52,686] [pool-1-thread-10] Initializing /data/openjpeg/Cevennes2.jp2: [testng] [2024-09-26 06:35:53,519] [pool-1-thread-12] Initializing /data/ome/n2_plate18_P24_w1.tif: [testng] [2024-09-26 06:35:55,745] [pool-1-thread-5] Initializing /data/openjpeg/Rome.jp2: [testng] [2024-09-26 06:35:57,470] [pool-1-thread-8] Initializing /data/openjpeg/Cevennes1.j2k: [testng] [2024-09-26 06:36:00,364] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Bretagne2.jpg: [testng] [2024-09-26 06:36:00,636] [pool-1-thread-7] Initializing /data/ome/Adultmidsection.lsm: [testng] [2024-09-26 06:36:01,618] [pool-1-thread-1] Initializing /data/openjpeg/Bretagne2.bmp: [testng] [2024-09-26 06:36:02,706] [pool-1-thread-10] Initializing /data/openjpeg/Bretagne2.j2k: [testng] [2024-09-26 06:36:04,951] [pool-1-thread-5] Initializing /data/openjpeg/Facade.pnm: [testng] [2024-09-26 06:36:05,159] [pool-1-thread-2] Initializing /data/openjpeg/thumb_FacadeCOMP.jpg: [testng] [2024-09-26 06:36:05,386] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Speedway.jpg: [testng] [2024-09-26 06:36:06,048] [pool-1-thread-11] Initializing /data/TAABA/TAABA.pattern: [testng] [2024-09-26 06:36:37,287] [pool-1-thread-12] Initializing /data/ome/011B1_Morph.HTD: [testng] [2024-09-26 06:36:38,818] [pool-1-thread-1] Initializing /data/ome/CHOBI_d3d.dv: [testng] [2024-09-26 06:36:39,666] [pool-1-thread-7] Initializing /data/ome/t0_pos1-0_5x.lsm: [testng] [2024-09-26 06:36:40,592] [pool-1-thread-3] Initializing /data/ome/Cpharynxzs1.lsm: [testng] [2024-09-26 06:36:41,405] [pool-1-thread-2] Initializing /data/ome/compressed2ChZ.lsm: [testng] [2024-09-26 06:36:42,261] [pool-1-thread-4] Initializing /data/ome/210502-0min-NFKB-4.r3d: [testng] [2024-09-26 06:36:42,546] [pool-1-thread-5] Initializing /data/ome/EXPERIMENT38_w1FITC_t1.STK: [testng] [2024-09-26 06:36:44,086] [pool-1-thread-6] Initializing /data/ome/anusgfpzs.lsm: [testng] [2024-09-26 06:36:46,077] [pool-1-thread-1] Initializing /data/mouse-kidney/mouse-kidney.lif: [testng] [2024-09-26 06:36:48,429] [pool-1-thread-4] Initializing /data/ome/tinyTest.d3d.dv: [testng] [2024-09-26 06:36:49,484] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Cevennes2.jpg: [testng] [2024-09-26 06:36:49,691] [pool-1-thread-7] Initializing /data/ome/cb_1.r3d: [testng] [2024-09-26 06:36:50,275] [pool-1-thread-2] Initializing /data/ome/C1midmusnorm.lsm: [testng] [2024-09-26 06:36:51,125] [pool-1-thread-8] Initializing /data/openjpeg/thumb_facade.jpg: [testng] [2024-09-26 06:36:51,379] [pool-1-thread-1] Initializing /data/openjpeg/Rome.ppm: [testng] [2024-09-26 06:36:51,711] [pool-1-thread-6] Initializing /data/openjpeg/thumb_Rome.jpg: [testng] [2024-09-26 06:36:52,296] [pool-1-thread-4] Initializing /data/ome/nfat10x3 good2_D12_w1.TIF: [testng] [2024-09-26 06:36:53,539] [pool-1-thread-5] Initializing /data/ome/PA-tub-wtmcakthurs-5_w1GFP_t1.STK: [testng] [2024-09-26 06:36:55,102] [pool-1-thread-9] Initializing /data/ome/C1.lsm: [testng] [2024-09-26 06:36:56,126] [pool-1-thread-7] Initializing /data/ome/Cmidmusgfp1.lsm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 3127, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 43 seconds Finished: SUCCESS