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Started by upstream project "BIOFORMATS-test-repo" build number 201 originally caused by: Started by upstream project "Trigger" build number 226 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins5454333875049861951.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_31847_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 12:32:08,838 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 12:32:08,839 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 12:32:08,839 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:32:08,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:32:08,840 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:32:08,841 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:32:08,841 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:32:08,841 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:32:08,841 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:32:08,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:32:08,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:32:08,843 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:32:08,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:32:08,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:32:09,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:32:09,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:32:09,028 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:32:09,029 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:32:09,029 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:32:09,029 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:32:09,029 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 12:32:09,030 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 12:32:09,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-26 12:32:09,039] [main] java.version = 21 [testng] 12:32:09,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:32:09,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:09,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-26_12-32-09.log] [testng] 12:32:09,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-26 12:32:09,084] [main] testng.directory = /data [testng] [2024-09-26 12:32:09,085] [main] testng.configDirectory = /config [testng] [2024-09-26 12:32:09,093] [main] testng.multiplier = 1.0 [testng] [2024-09-26 12:32:09,093] [main] testng.in-memory = false [testng] [2024-09-26 12:32:09,094] [main] testng.allow-missing = false [testng] [2024-09-26 12:32:09,094] [main] user.language = en [testng] [2024-09-26 12:32:09,094] [main] user.country = ${user.country} [testng] [2024-09-26 12:32:09,094] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-26 12:32:09,575] [main] ---------------------------------------- [testng] [2024-09-26 12:32:09,575] [main] Total files: 25 [testng] [2024-09-26 12:32:09,575] [main] Scan time: 0.48 s (19 ms/file) [testng] [2024-09-26 12:32:09,580] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-26 12:32:12,230] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] 12:32:12,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:32:12,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-26_12-32-12.log] [testng] 12:32:12,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3748d9da - End of configuration. [testng] [2024-09-26 12:32:12,304] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 12:32:12,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:32:12,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-26_12-32-12.log] [testng] 12:32:12,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25d4b6f0 - End of configuration. [testng] [2024-09-26 12:32:12,373] [pool-1-thread-11] Initializing /data/brian/images/GRN.PCT: [testng] 12:32:12,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:32:12,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-26_12-32-12.log] [testng] 12:32:12,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@523cbb1b - End of configuration. [testng] [2024-09-26 12:32:12,445] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 12:32:12,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:32:12,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-26_12-32-12.log] [testng] 12:32:12,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cb74f7e - End of configuration. [testng] [2024-09-26 12:32:12,507] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 12:32:12,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:32:12,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-26_12-32-12.log] [testng] 12:32:12,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cbe01c8 - End of configuration. [testng] [2024-09-26 12:32:12,599] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict: [testng] 12:32:12,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:32:12,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-26_12-32-12.log] [testng] 12:32:12,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6846bddf - End of configuration. [testng] [2024-09-26 12:32:12,675] [pool-1-thread-7] Initializing /data/jqd/32bit.pict: [testng] 12:32:12,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:32:12,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-26_12-32-12.log] [testng] 12:32:12,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c74ced6 - End of configuration. [testng] [2024-09-26 12:32:12,746] [pool-1-thread-6] Initializing /data/brian/images/YEL.PCT: [testng] 12:32:12,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:32:12,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-26_12-32-12.log] [testng] 12:32:12,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45797649 - End of configuration. [testng] [2024-09-26 12:32:12,799] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 12:32:12,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:32:12,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-26_12-32-12.log] [testng] 12:32:12,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66f2c1ec - End of configuration. [testng] [2024-09-26 12:32:12,848] [pool-1-thread-4] Initializing /data/misc/planet.pict: [testng] 12:32:12,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:32:12,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-26_12-32-12.log] [testng] 12:32:12,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3df9a0a6 - End of configuration. [testng] [2024-09-26 12:32:12,918] [pool-1-thread-3] Initializing /data/brian/images/BLK.PCT: [testng] 12:32:12,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:32:12,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-26_12-32-12.log] [testng] 12:32:12,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6b1c4 - End of configuration. [testng] [2024-09-26 12:32:12,976] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT: [testng] 12:32:12,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:32:12,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:32:12,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-26_12-32-12.log] [testng] 12:32:12,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37108b4a - End of configuration. [testng] [2024-09-26 12:32:15,057] [pool-1-thread-1] Initializing /data/brian/images/VENUS.pct: [testng] [2024-09-26 12:32:15,106] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-09-26 12:32:15,260] [pool-1-thread-12] Initializing /data/brian/images/WHT.PCT: [testng] [2024-09-26 12:32:15,497] [pool-1-thread-11] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-09-26 12:32:15,538] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-09-26 12:32:15,576] [pool-1-thread-3] Initializing /data/jqd/mireSixteen.pict: [testng] [2024-09-26 12:32:15,619] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT: [testng] [2024-09-26 12:32:15,683] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-09-26 12:32:15,863] [pool-1-thread-4] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-09-26 12:32:15,904] [pool-1-thread-9] Initializing /data/jqd/mire32.pict: [testng] [2024-09-26 12:32:15,955] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] [2024-09-26 12:32:16,127] [pool-1-thread-10] Initializing /data/misc/planet2.pict: [testng] [2024-09-26 12:32:16,582] [pool-1-thread-8] Initializing /data/brian/images/TRU256.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS