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Started by upstream project "BIOFORMATS-test-repo" build number 201 originally caused by: Started by upstream project "Trigger" build number 226 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins10028966819956000918.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_31881_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 13:33:04,346 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 13:33:04,347 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 13:33:04,347 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:33:04,348 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:33:04,349 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:33:04,349 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:33:04,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:33:04,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:33:04,350 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:33:04,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:33:04,351 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:33:04,351 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:33:04,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:33:04,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:33:04,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:33:04,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:33:04,535 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:33:04,535 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:33:04,535 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:33:04,536 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:33:04,536 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 13:33:04,537 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 13:33:04,537 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-26 13:33:04,545] [main] java.version = 21 [testng] 13:33:04,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:33:04,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:33:04,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-26_13-33-04.log] [testng] 13:33:04,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-26 13:33:04,593] [main] testng.directory = /data [testng] [2024-09-26 13:33:04,593] [main] testng.configDirectory = /config [testng] [2024-09-26 13:33:04,601] [main] testng.multiplier = 1.0 [testng] [2024-09-26 13:33:04,602] [main] testng.in-memory = false [testng] [2024-09-26 13:33:04,602] [main] testng.allow-missing = false [testng] [2024-09-26 13:33:04,602] [main] user.language = en [testng] [2024-09-26 13:33:04,602] [main] user.country = ${user.country} [testng] [2024-09-26 13:33:04,602] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-26 13:45:36,261] [main] ---------------------------------------- [testng] [2024-09-26 13:45:36,262] [main] Total files: 7329 [testng] [2024-09-26 13:45:36,262] [main] Scan time: 751.659 s (102 ms/file) [testng] [2024-09-26 13:45:36,262] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-26 13:56:55,438] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] 13:56:55,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:56:55,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:56:55,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-26_13-56-55.log] [testng] 13:56:55,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@741db0f2 - End of configuration. [testng] [2024-09-26 13:56:57,177] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] 13:56:57,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:56:57,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:56:57,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-26_13-56-57.log] [testng] 13:56:57,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a6767f4 - End of configuration. [testng] [2024-09-26 13:56:58,654] [pool-1-thread-11] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] 13:56:58,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:56:58,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:56:58,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-26_13-56-58.log] [testng] 13:56:58,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f1600a6 - End of configuration. [testng] [2024-09-26 13:57:00,167] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] 13:57:00,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:57:00,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:00,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-26_13-57-00.log] [testng] 13:57:00,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68e62a6d - End of configuration. [testng] [2024-09-26 13:57:01,660] [pool-1-thread-9] Initializing /data/graham/G_Wright deconvolved.stk: [testng] 13:57:01,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:57:01,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:01,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-26_13-57-01.log] [testng] 13:57:01,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62ab1930 - End of configuration. [testng] [2024-09-26 13:57:02,957] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] 13:57:02,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:57:02,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:02,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-26_13-57-02.log] [testng] 13:57:02,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d364f3f - End of configuration. [testng] [2024-09-26 13:57:04,652] [pool-1-thread-7] Initializing /data/qa-16915/m-01.tif: [testng] 13:57:04,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:57:04,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:04,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-26_13-57-04.log] [testng] 13:57:04,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52909a4 - End of configuration. [testng] [2024-09-26 13:57:06,772] [pool-1-thread-6] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] 13:57:06,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:57:06,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:06,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-26_13-57-06.log] [testng] 13:57:06,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b96df36 - End of configuration. [testng] [2024-09-26 13:57:08,257] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] 13:57:08,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:57:08,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:08,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-26_13-57-08.log] [testng] 13:57:08,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b8bc0dc - End of configuration. [testng] [2024-09-26 13:57:14,777] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] 13:57:14,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:57:14,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:14,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-26_13-57-14.log] [testng] 13:57:14,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a930f5a - End of configuration. [testng] [2024-09-26 13:57:16,375] [pool-1-thread-3] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] 13:57:16,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:57:16,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:16,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-26_13-57-16.log] [testng] 13:57:16,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@521156c9 - End of configuration. [testng] [2024-09-26 13:57:18,003] [pool-1-thread-2] Initializing /data/heiko/sample_3x3.stk: [testng] 13:57:18,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:57:18,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:18,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-26_13-57-18.log] [testng] 13:57:18,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b8909d7 - End of configuration. [testng] [2024-09-26 13:57:29,148] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-26 13:57:30,869] [pool-1-thread-12] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-09-26 13:57:32,502] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-09-26 13:57:39,403] [pool-1-thread-1] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-09-26 13:57:40,756] [pool-1-thread-6] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-09-26 13:57:42,306] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-09-26 13:57:43,967] [pool-1-thread-7] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-09-26 13:57:45,575] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-09-26 13:57:47,934] [pool-1-thread-2] Used files list does not include base file [testng] [2024-09-26 13:57:52,705] [pool-1-thread-11] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-09-26 13:58:22,972] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-09-26 13:58:24,963] [pool-1-thread-7] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-09-26 13:58:26,659] [pool-1-thread-1] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-09-26 13:58:31,199] [pool-1-thread-9] Initializing /data/dave/Z Series.stk: [testng] [2024-09-26 13:58:32,879] [pool-1-thread-4] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-09-26 13:58:35,907] [pool-1-thread-3] Initializing /data/jerome/deconv.STK: [testng] [2024-09-26 13:58:42,196] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-26 13:58:44,281] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-09-26 13:58:47,304] [pool-1-thread-3] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-09-26 13:58:49,337] [pool-1-thread-9] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-09-26 13:58:52,109] [pool-1-thread-7] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-09-26 13:58:54,111] [pool-1-thread-5] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-09-26 13:58:58,084] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-09-26 13:59:05,014] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-09-26 13:59:08,924] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-09-26 13:59:16,651] [pool-1-thread-6] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-09-26 13:59:18,674] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-09-26 13:59:20,295] [pool-1-thread-10] Used files list does not include base file [testng] [2024-09-26 13:59:20,325] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-09-26 13:59:22,907] [pool-1-thread-8] Used files list does not include base file [testng] [2024-09-26 13:59:22,909] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-09-26 13:59:33,876] [pool-1-thread-12] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-09-26 13:59:36,073] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-09-26 13:59:46,120] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-09-26 13:59:48,949] [pool-1-thread-2] Used files list does not include base file [testng] [2024-09-26 13:59:50,115] [pool-1-thread-3] Initializing /data/samples/zserEight.stk: [testng] [2024-09-26 13:59:54,444] [pool-1-thread-10] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-09-26 14:00:02,819] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 14:00:05,126] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-09-26 14:00:07,895] [pool-1-thread-3] Used files list does not include base file [testng] 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[testng] [2024-09-26 14:02:51,059] [pool-1-thread-12] Initializing /data/cumol-test-series/23.001: [testng] [2024-09-26 14:02:59,179] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-09-26 14:03:03,636] [pool-1-thread-5] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-09-26 14:03:05,416] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-09-26 14:03:12,486] [pool-1-thread-9] Initializing /data/ascb/mt aim.tif: [testng] [2024-09-26 14:03:19,978] [pool-1-thread-4] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-09-26 14:03:25,032] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-09-26 14:03:33,719] [pool-1-thread-4] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-09-26 14:03:57,360] [pool-1-thread-5] Initializing 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14:04:58,935] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-09-26 14:05:02,576] [pool-1-thread-7] Initializing /data/josh/2101to600e.stk: [testng] [2024-09-26 14:05:13,468] [pool-1-thread-10] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-09-26 14:05:17,893] [pool-1-thread-8] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-09-26 14:05:27,307] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-09-26 14:05:33,092] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-09-26 14:05:38,018] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-09-26 14:05:48,013] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] 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z/MDA_TL_z_t1.TIF: [testng] [2024-09-26 14:06:41,854] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 14:06:46,221] [pool-1-thread-1] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-09-26 14:06:47,792] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-09-26 14:07:03,080] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-09-26 14:07:05,811] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-09-26 14:07:07,274] [pool-1-thread-5] Initializing /data/alex/Selected FITC.stk: [testng] [2024-09-26 14:07:10,700] [pool-1-thread-3] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-09-26 14:07:15,384] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-09-26 14:07:16,735] [pool-1-thread-1] Used files list does not include base file [testng] [2024-09-26 14:07:18,209] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-09-26 14:07:19,555] [pool-1-thread-2] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-09-26 14:07:31,409] [pool-1-thread-3] Initializing /data/josh/2101to600f.stk: [testng] [2024-09-26 14:07:47,423] [pool-1-thread-9] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-09-26 14:07:48,994] [pool-1-thread-5] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-09-26 14:07:51,224] [pool-1-thread-6] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-09-26 14:07:54,349] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-09-26 14:07:56,018] [pool-1-thread-1] Used files list does not include base file [testng] [2024-09-26 14:07:56,709] [pool-1-thread-9] Initializing /data/qa-16915/m-02.tif: [testng] 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14:08:21,398] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-09-26 14:08:23,603] [pool-1-thread-12] Used files list does not include base file [testng] [2024-09-26 14:08:23,635] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-09-26 14:08:30,679] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-26 14:08:45,997] [pool-1-thread-9] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-09-26 14:08:54,982] [pool-1-thread-6] Initializing /data/samples/zserSixteen.stk: [testng] [2024-09-26 14:08:56,431] [pool-1-thread-7] Initializing /data/thomas/t_test2001.tif: [testng] [2024-09-26 14:09:02,857] [pool-1-thread-6] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-09-26 14:09:04,285] [pool-1-thread-1] Initializing 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Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-09-26 14:10:02,328] [pool-1-thread-10] Initializing /data/samples/diatoms3d.stk: [testng] [2024-09-26 14:10:03,206] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-09-26 14:10:04,171] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 14:10:07,106] [pool-1-thread-6] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-09-26 14:10:13,342] [pool-1-thread-9] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-09-26 14:10:19,261] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] [2024-09-26 14:10:23,260] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-09-26 14:10:29,927] [pool-1-thread-9] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-09-26 14:10:31,758] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 14:10:33,624] [pool-1-thread-5] Initializing /data/grant/X.STK: [testng] [2024-09-26 14:10:36,659] [pool-1-thread-12] Initializing /data/jae/RGB_s34.tif: [testng] [2024-09-26 14:10:41,768] [pool-1-thread-9] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-09-26 14:10:44,715] [pool-1-thread-10] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-09-26 14:10:46,177] [pool-1-thread-3] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-09-26 14:10:50,069] [pool-1-thread-12] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-09-26 14:10:52,097] [pool-1-thread-1] Initializing /data/samples/zser24.stk: [testng] [2024-09-26 14:10:53,747] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-09-26 14:10:56,484] [pool-1-thread-5] Used files list does not include base file [testng] [2024-09-26 14:10:59,706] [pool-1-thread-10] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-09-26 14:11:01,419] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-09-26 14:11:03,453] [pool-1-thread-3] Used files list does not include base file [testng] [2024-09-26 14:11:04,122] [pool-1-thread-1] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-09-26 14:11:10,717] [pool-1-thread-9] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-09-26 14:11:13,274] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-09-26 14:11:14,980] [pool-1-thread-1] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-09-26 14:11:17,987] [pool-1-thread-7] Initializing /data/samples/zseries.stk: [testng] [2024-09-26 14:11:21,201] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-09-26 14:11:24,281] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 14:11:25,787] [pool-1-thread-1] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-09-26 14:11:29,133] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-09-26 14:11:35,812] [pool-1-thread-1] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-09-26 14:11:36,748] [pool-1-thread-12] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-09-26 14:11:39,337] [pool-1-thread-7] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-09-26 14:11:41,717] [pool-1-thread-1] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-09-26 14:11:50,337] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-09-26 14:11:51,881] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-09-26 14:11:53,181] [pool-1-thread-9] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-09-26 14:11:57,855] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-09-26 14:12:01,345] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-09-26 14:12:03,216] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-09-26 14:12:05,389] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-09-26 14:12:17,460] [pool-1-thread-7] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-09-26 14:12:20,486] [pool-1-thread-3] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-09-26 14:12:24,800] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-09-26 14:12:29,910] [pool-1-thread-10] Initializing /data/steve/Experiment2.tif: [testng] [2024-09-26 14:12:31,172] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-09-26 14:12:32,580] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-26 14:12:32,581] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-09-26 14:12:36,631] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 14:12:38,453] [pool-1-thread-10] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-09-26 14:12:42,076] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-09-26 14:12:43,474] [pool-1-thread-9] Used files list does not include base file [testng] [2024-09-26 14:12:53,409] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-09-26 14:13:08,297] [pool-1-thread-10] Initializing /data/thomas/test.tif: [testng] [2024-09-26 14:13:14,839] [pool-1-thread-10] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-09-26 14:13:21,538] [pool-1-thread-9] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-09-26 14:13:24,557] [pool-1-thread-10] Initializing /data/david/tl4.tif: [testng] [2024-09-26 14:13:28,789] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-09-26 14:13:34,476] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-09-26 14:13:37,851] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-09-26 14:13:39,033] [pool-1-thread-10] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-09-26 14:13:42,861] [pool-1-thread-7] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-09-26 14:13:44,032] [pool-1-thread-5] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-09-26 14:13:46,486] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-09-26 14:13:47,745] [pool-1-thread-10] Used files list does not include base file [testng] [2024-09-26 14:13:48,987] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-09-26 14:13:50,130] [pool-1-thread-9] Used files list does not include base file [testng] [2024-09-26 14:13:51,394] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-09-26 14:13:53,021] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-26 14:13:58,138] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-09-26 14:14:01,843] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-09-26 14:14:03,384] [pool-1-thread-10] Used files list does not include base file [testng] 16:01:19,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 16:01:19,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:01:19,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-26_16-01-19.log] [testng] 16:01:19,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d834d38 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 148 minutes 18 seconds Finished: SUCCESS