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Started by upstream project "BIOFORMATS-test-repo" build number 202 originally caused by: Started by upstream project "Trigger" build number 228 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11275053542672763433.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_31961_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 05:21:34,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:21:34,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 05:21:34,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:21:34,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:21:34,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:21:34,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:21:34,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:21:34,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:21:34,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:21:34,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:21:34,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:21:34,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:21:34,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:21:34,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:21:34,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:21:34,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:21:34,438 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:21:34,438 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:21:34,438 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:21:34,439 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:21:34,439 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 05:21:34,440 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 05:21:34,440 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 356 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-27 05:21:34,449] [main] java.version = 1.8.0_342 [testng] 05:21:34,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:21:34,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:34,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-27_05-21-34.log] [testng] 05:21:34,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-27 05:21:34,499] [main] testng.directory = /data [testng] [2024-09-27 05:21:34,499] [main] testng.configDirectory = /config [testng] [2024-09-27 05:21:34,665] [main] testng.multiplier = 1.0 [testng] [2024-09-27 05:21:34,665] [main] testng.in-memory = false [testng] [2024-09-27 05:21:34,665] [main] testng.allow-missing = false [testng] [2024-09-27 05:21:34,665] [main] user.language = en [testng] [2024-09-27 05:21:34,665] [main] user.country = ${user.country} [testng] [2024-09-27 05:21:34,665] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-27 05:21:35,370] [main] ---------------------------------------- [testng] [2024-09-27 05:21:35,370] [main] Total files: 36 [testng] [2024-09-27 05:21:35,370] [main] Scan time: 0.705 s (19 ms/file) [testng] [2024-09-27 05:21:35,370] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-27 05:21:36,924] [pool-1-thread-1] Initializing /data/generated/mri-stack14.pcx: [testng] 05:21:36,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:21:36,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:36,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-27_05-21-36.log] [testng] 05:21:36,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56f69e2d - End of configuration. [testng] [2024-09-27 05:21:36,983] [pool-1-thread-12] Initializing /data/generated/mri-stack24.pcx: [testng] 05:21:36,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:21:36,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:36,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-27_05-21-36.log] [testng] 05:21:36,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77619a0f - End of configuration. [testng] [2024-09-27 05:21:36,992] [pool-1-thread-11] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] 05:21:36,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:21:36,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:36,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-27_05-21-36.log] [testng] 05:21:36,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1136815e - End of configuration. [testng] [2024-09-27 05:21:37,004] [pool-1-thread-10] Initializing /data/generated/mri-stack18.pcx: [testng] 05:21:37,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:21:37,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:37,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-27_05-21-37.log] [testng] 05:21:37,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ac286f6 - End of configuration. [testng] [2024-09-27 05:21:37,013] [pool-1-thread-9] Initializing /data/generated/mri-stack6.pcx: [testng] 05:21:37,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:21:37,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:37,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-27_05-21-37.log] [testng] 05:21:37,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b170bb9 - End of configuration. [testng] [2024-09-27 05:21:37,021] [pool-1-thread-8] Initializing /data/generated/mri-stack8.pcx: [testng] 05:21:37,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:21:37,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:37,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-27_05-21-37.log] [testng] 05:21:37,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3337a426 - End of configuration. [testng] [2024-09-27 05:21:37,028] [pool-1-thread-7] Initializing /data/generated/mri-stack12.pcx: [testng] 05:21:37,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:21:37,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:37,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-27_05-21-37.log] [testng] 05:21:37,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36c16470 - End of configuration. [testng] [2024-09-27 05:21:37,037] [pool-1-thread-6] Initializing /data/generated/mri-stack5.pcx: [testng] 05:21:37,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:21:37,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:37,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-27_05-21-37.log] [testng] 05:21:37,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a1fdb85 - End of configuration. [testng] [2024-09-27 05:21:37,044] [pool-1-thread-5] Initializing /data/generated/mri-stack16.pcx: [testng] 05:21:37,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:21:37,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:37,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-27_05-21-37.log] [testng] 05:21:37,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f784c8a - End of configuration. [testng] [2024-09-27 05:21:37,051] [pool-1-thread-4] Initializing /data/generated/mri-stack20.pcx: [testng] 05:21:37,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:21:37,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:37,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-27_05-21-37.log] [testng] 05:21:37,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71a6d3f4 - End of configuration. [testng] [2024-09-27 05:21:37,059] [pool-1-thread-3] Initializing /data/generated/mri-stack19.pcx: [testng] 05:21:37,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:21:37,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:37,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-27_05-21-37.log] [testng] 05:21:37,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1816330a - End of configuration. [testng] [2024-09-27 05:21:37,066] [pool-1-thread-2] Initializing /data/generated/mri-stack9.pcx: [testng] 05:21:37,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:21:37,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:21:37,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-27_05-21-37.log] [testng] 05:21:37,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7be1bf4c - End of configuration. [testng] [2024-09-27 05:21:39,384] [pool-1-thread-4] Initializing /data/generated/mri-stack4.pcx: [testng] [2024-09-27 05:21:39,393] [pool-1-thread-5] Initializing /data/generated/mri-stack23.pcx: [testng] [2024-09-27 05:21:39,399] [pool-1-thread-6] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-09-27 05:21:39,406] [pool-1-thread-10] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-09-27 05:21:39,413] [pool-1-thread-9] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-09-27 05:21:39,423] [pool-1-thread-8] Initializing /data/generated/mri-stack17.pcx: [testng] [2024-09-27 05:21:39,430] [pool-1-thread-2] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-09-27 05:21:39,435] [pool-1-thread-12] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-09-27 05:21:39,441] [pool-1-thread-7] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-09-27 05:21:39,450] [pool-1-thread-3] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-09-27 05:21:39,456] [pool-1-thread-1] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-09-27 05:21:39,464] [pool-1-thread-11] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-09-27 05:21:40,079] [pool-1-thread-3] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-09-27 05:21:40,093] [pool-1-thread-7] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-09-27 05:21:40,101] [pool-1-thread-5] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-09-27 05:21:40,116] [pool-1-thread-6] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-09-27 05:21:40,139] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] [2024-09-27 05:21:40,144] [pool-1-thread-2] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-09-27 05:21:40,157] [pool-1-thread-4] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-09-27 05:21:40,165] [pool-1-thread-10] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-09-27 05:21:40,171] [pool-1-thread-12] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-09-27 05:21:40,620] [pool-1-thread-11] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-09-27 05:21:40,668] [pool-1-thread-1] Initializing /data/generated/mri-stack1.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS