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Started by upstream project "BIOFORMATS-test-repo" build number 202 originally caused by: Started by upstream project "Trigger" build number 228 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins3400755912637506437.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32049_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 06:54:46,390 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:54:46,392 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 06:54:46,392 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:54:46,394 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:54:46,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:54:46,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:54:46,394 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:54:46,394 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:54:46,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:54:46,395 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:54:46,395 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:54:46,395 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:54:46,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:54:46,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:54:46,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:54:46,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:54:46,690 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:54:46,691 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:54:46,691 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:54:46,691 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:54:46,691 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 06:54:46,692 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 06:54:46,692 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-27 06:54:46,703] [main] java.version = 1.8.0_342 [testng] 06:54:46,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:54:46,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:54:46,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-27_06-54-46.log] [testng] 06:54:46,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-27 06:54:46,758] [main] testng.directory = /data [testng] [2024-09-27 06:54:46,759] [main] testng.configDirectory = /config [testng] [2024-09-27 06:54:46,772] [main] testng.multiplier = 1.0 [testng] [2024-09-27 06:54:46,772] [main] testng.in-memory = false [testng] [2024-09-27 06:54:46,772] [main] testng.allow-missing = false [testng] [2024-09-27 06:54:46,772] [main] user.language = en [testng] [2024-09-27 06:54:46,772] [main] user.country = ${user.country} [testng] [2024-09-27 06:54:46,772] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-27 06:57:56,564] [main] ---------------------------------------- [testng] [2024-09-27 06:57:56,564] [main] Total files: 268 [testng] [2024-09-27 06:57:56,565] [main] Scan time: 189.791 s (708 ms/file) [testng] [2024-09-27 06:57:56,565] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-27 07:01:17,242] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] 07:01:17,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:01:17,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:17,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-27_07-01-17.log] [testng] 07:01:17,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75906d07 - End of configuration. [testng] [2024-09-27 07:01:17,803] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] 07:01:17,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:01:17,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:17,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-27_07-01-17.log] [testng] 07:01:17,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39a5353d - End of configuration. [testng] [2024-09-27 07:01:18,450] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] 07:01:18,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:01:18,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:18,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-27_07-01-18.log] [testng] 07:01:18,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274face4 - End of configuration. [testng] [2024-09-27 07:01:19,080] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] 07:01:19,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:01:19,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:19,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-27_07-01-19.log] [testng] 07:01:19,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e26d618 - End of configuration. [testng] [2024-09-27 07:01:20,016] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] 07:01:20,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:01:20,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:20,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-27_07-01-20.log] [testng] 07:01:20,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6396c724 - End of configuration. [testng] [2024-09-27 07:01:20,777] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] 07:01:20,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:01:20,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:20,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-27_07-01-20.log] [testng] 07:01:20,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aaa86f9 - End of configuration. [testng] [2024-09-27 07:01:23,447] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] 07:01:23,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:01:23,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:23,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-27_07-01-23.log] [testng] 07:01:23,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57f2dd85 - End of configuration. [testng] [2024-09-27 07:01:24,312] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] 07:01:24,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:01:24,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:24,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-27_07-01-24.log] [testng] 07:01:24,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49269d8c - End of configuration. [testng] [2024-09-27 07:01:26,291] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] 07:01:26,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:01:26,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:26,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-27_07-01-26.log] [testng] 07:01:26,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd2741e - End of configuration. [testng] [2024-09-27 07:01:27,109] [pool-1-thread-4] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] 07:01:27,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:01:27,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:27,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-27_07-01-27.log] [testng] 07:01:27,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d94a72c - End of configuration. [testng] [2024-09-27 07:01:27,892] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] 07:01:27,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:01:27,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:27,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-27_07-01-27.log] [testng] 07:01:27,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e19411e - End of configuration. [testng] [2024-09-27 07:01:28,389] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] 07:01:28,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:01:28,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:28,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-27_07-01-28.log] [testng] 07:01:28,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68d6df7b - End of configuration. [testng] [2024-09-27 07:01:33,613] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-09-27 07:01:34,105] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-09-27 07:01:36,093] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-09-27 07:01:36,558] [pool-1-thread-12] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-09-27 07:01:38,261] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-09-27 07:01:38,823] [pool-1-thread-8] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-09-27 07:01:40,655] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-09-27 07:01:55,996] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-09-27 07:02:11,284] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-09-27 07:02:16,440] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-09-27 07:02:17,197] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-09-27 07:02:18,070] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-09-27 07:02:19,046] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-09-27 07:02:21,873] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-09-27 07:02:22,270] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-09-27 07:02:22,696] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-09-27 07:02:27,275] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-09-27 07:02:28,827] [pool-1-thread-4] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-09-27 07:02:29,582] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-09-27 07:02:36,455] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-09-27 07:02:38,044] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-09-27 07:02:39,739] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-09-27 07:02:42,457] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-09-27 07:02:43,136] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-09-27 07:02:43,694] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-09-27 07:02:45,713] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits: [testng] [2024-09-27 07:02:46,941] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-09-27 07:02:48,807] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-09-27 07:02:50,532] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-09-27 07:02:51,408] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-09-27 07:02:51,812] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-09-27 07:02:56,868] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-09-27 07:02:57,863] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-09-27 07:02:58,225] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-09-27 07:02:59,109] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-09-27 07:03:01,582] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-09-27 07:03:04,545] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-09-27 07:03:05,004] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-09-27 07:03:05,486] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-09-27 07:03:05,673] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-09-27 07:03:09,334] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-09-27 07:03:09,853] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-09-27 07:03:10,341] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-09-27 07:03:10,978] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-09-27 07:03:14,354] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-09-27 07:03:16,252] [pool-1-thread-3] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-09-27 07:03:17,320] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-09-27 07:03:18,546] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-09-27 07:03:18,861] [pool-1-thread-8] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-09-27 07:03:19,146] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-09-27 07:03:19,499] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-09-27 07:03:19,718] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-09-27 07:03:20,308] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-09-27 07:03:20,435] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-09-27 07:03:21,249] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-09-27 07:03:22,871] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-09-27 07:03:23,330] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-09-27 07:03:23,994] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-09-27 07:03:24,405] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-09-27 07:03:24,773] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-09-27 07:03:28,935] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-09-27 07:03:30,324] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-09-27 07:03:30,732] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-09-27 07:03:33,184] [pool-1-thread-11] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-09-27 07:03:35,795] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-09-27 07:03:36,189] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-09-27 07:03:36,370] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-09-27 07:03:36,621] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-09-27 07:03:37,042] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-09-27 07:03:37,609] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-09-27 07:03:37,777] [pool-1-thread-10] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-09-27 07:03:39,440] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-09-27 07:03:40,639] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-09-27 07:03:41,306] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-09-27 07:03:41,778] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-09-27 07:03:42,195] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-09-27 07:03:42,681] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-09-27 07:03:43,084] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-09-27 07:03:43,786] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-09-27 07:03:45,431] [pool-1-thread-8] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-09-27 07:03:48,580] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-09-27 07:03:49,431] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-09-27 07:03:50,161] [pool-1-thread-3] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-09-27 07:03:50,573] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-09-27 07:03:51,016] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-09-27 07:03:51,355] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-09-27 07:03:51,562] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-09-27 07:03:51,777] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-09-27 07:03:52,184] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-09-27 07:03:53,919] [pool-1-thread-10] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-09-27 07:03:57,547] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-09-27 07:03:57,738] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-09-27 07:03:59,133] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-09-27 07:03:59,706] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-09-27 07:04:00,121] [pool-1-thread-3] Initializing /data/steve/FITS/M13.fits: [testng] [2024-09-27 07:04:00,268] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-09-27 07:04:00,793] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-09-27 07:04:01,221] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits: [testng] [2024-09-27 07:04:01,501] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-09-27 07:04:03,033] [pool-1-thread-8] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-09-27 07:04:05,831] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-09-27 07:04:06,487] [pool-1-thread-4] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-09-27 07:04:07,305] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-09-27 07:04:08,215] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-09-27 07:04:08,967] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-09-27 07:04:09,554] [pool-1-thread-1] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-09-27 07:04:10,368] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-09-27 07:04:10,780] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-09-27 07:04:11,234] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-09-27 07:04:11,901] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-09-27 07:04:13,153] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-09-27 07:04:13,897] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-09-27 07:04:16,194] [pool-1-thread-3] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-09-27 07:04:17,175] [pool-1-thread-4] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-09-27 07:04:19,034] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-09-27 07:04:19,771] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-09-27 07:04:23,374] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-09-27 07:04:23,982] [pool-1-thread-12] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-09-27 07:04:24,619] [pool-1-thread-6] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-09-27 07:04:24,912] [pool-1-thread-9] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-09-27 07:04:25,358] [pool-1-thread-11] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-09-27 07:04:26,811] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-09-27 07:04:29,223] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-09-27 07:04:30,828] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-09-27 07:04:33,321] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-09-27 07:04:36,447] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-09-27 07:04:37,096] [pool-1-thread-1] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-09-27 07:04:38,573] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-09-27 07:04:39,812] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-09-27 07:04:41,002] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-09-27 07:04:41,371] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-09-27 07:04:42,499] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-09-27 07:04:43,269] [pool-1-thread-11] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-09-27 07:04:45,229] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-09-27 07:04:47,286] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-09-27 07:04:49,044] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-09-27 07:04:52,327] [pool-1-thread-6] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-09-27 07:04:54,241] [pool-1-thread-10] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-09-27 07:04:56,181] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-09-27 07:04:56,662] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-09-27 07:04:58,322] [pool-1-thread-8] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-09-27 07:04:59,546] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-09-27 07:05:00,012] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-09-27 07:05:00,506] [pool-1-thread-4] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-09-27 07:05:03,321] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-09-27 07:05:07,184] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-09-27 07:05:07,684] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-09-27 07:05:08,383] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 minutes 31 seconds Finished: SUCCESS