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Started by upstream project "BIOFORMATS-test-repo" build number 202 originally caused by: Started by upstream project "Trigger" build number 228 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins16584675902580196485.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32087_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:16:13,803 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:16:13,804 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 08:16:13,804 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:16:13,805 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:16:13,806 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:16:13,806 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:16:13,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:16:13,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:16:13,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:16:13,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:16:13,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:16:13,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:16:14,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:16:14,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:16:14,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:16:14,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:16:14,070 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:16:14,070 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:16:14,070 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:16:14,071 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:16:14,071 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 08:16:14,072 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 08:16:14,072 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 265 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-27 08:16:14,082] [main] java.version = 1.8.0_342 [testng] 08:16:14,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:16:14,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:14,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-27_08-16-14.log] [testng] 08:16:14,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-27 08:16:14,133] [main] testng.directory = /data [testng] [2024-09-27 08:16:14,133] [main] testng.configDirectory = /config [testng] [2024-09-27 08:16:14,145] [main] testng.multiplier = 1.0 [testng] [2024-09-27 08:16:14,145] [main] testng.in-memory = false [testng] [2024-09-27 08:16:14,145] [main] testng.allow-missing = false [testng] [2024-09-27 08:16:14,145] [main] user.language = en [testng] [2024-09-27 08:16:14,145] [main] user.country = ${user.country} [testng] [2024-09-27 08:16:14,146] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-27 08:16:14,747] [main] ---------------------------------------- [testng] [2024-09-27 08:16:14,747] [main] Total files: 21 [testng] [2024-09-27 08:16:14,747] [main] Scan time: 0.601 s (28 ms/file) [testng] [2024-09-27 08:16:14,747] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-27 08:16:17,540] [pool-1-thread-1] Initializing /data/samples/monkey_apng.png: [testng] 08:16:17,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:16:17,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-27_08-16-17.log] [testng] 08:16:17,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a94f4c7 - End of configuration. [testng] [2024-09-27 08:16:17,634] [pool-1-thread-12] Initializing /data/samples/MoonPhases.png: [testng] 08:16:17,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:16:17,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-27_08-16-17.log] [testng] 08:16:17,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e269045 - End of configuration. [testng] [2024-09-27 08:16:17,671] [pool-1-thread-11] Initializing /data/samples/daniel_coltri_one.png: [testng] 08:16:17,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:16:17,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-27_08-16-17.log] [testng] 08:16:17,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@715fd203 - End of configuration. [testng] [2024-09-27 08:16:17,709] [pool-1-thread-10] Initializing /data/qa-7473/x.png: [testng] 08:16:17,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:16:17,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-27_08-16-17.log] [testng] 08:16:17,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55979d66 - End of configuration. [testng] [2024-09-27 08:16:17,739] [pool-1-thread-9] Initializing /data/samples/william_wong04.png: [testng] 08:16:17,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:16:17,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-27_08-16-17.log] [testng] 08:16:17,740 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2656b5fb - End of configuration. [testng] [2024-09-27 08:16:17,772] [pool-1-thread-8] Initializing /data/samples/Matrix.png: [testng] 08:16:17,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:16:17,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-27_08-16-17.log] [testng] 08:16:17,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b47ddd1 - End of configuration. [testng] [2024-09-27 08:16:17,801] [pool-1-thread-7] Initializing /data/samples/phug_logo.png: [testng] 08:16:17,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:16:17,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-27_08-16-17.log] [testng] 08:16:17,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53909980 - End of configuration. [testng] [2024-09-27 08:16:17,827] [pool-1-thread-6] Initializing /data/samples/william_wong01.png: [testng] 08:16:17,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:16:17,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-27_08-16-17.log] [testng] 08:16:17,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6114061c - End of configuration. [testng] [2024-09-27 08:16:17,859] [pool-1-thread-5] Initializing /data/samples/william_wong02.png: [testng] 08:16:17,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:16:17,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-27_08-16-17.log] [testng] 08:16:17,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69c30a50 - End of configuration. [testng] [2024-09-27 08:16:17,890] [pool-1-thread-4] Initializing /data/samples/StarV838.png: [testng] 08:16:17,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:16:17,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-27_08-16-17.log] [testng] 08:16:17,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e781352 - End of configuration. [testng] [2024-09-27 08:16:17,913] [pool-1-thread-3] Initializing /data/samples/spinfox.png: [testng] 08:16:17,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:16:17,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-27_08-16-17.log] [testng] 08:16:17,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@764b946a - End of configuration. [testng] [2024-09-27 08:16:17,942] [pool-1-thread-2] Initializing /data/samples/orbit.png: [testng] 08:16:17,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:16:17,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:17,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-27_08-16-17.log] [testng] 08:16:17,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c32d19 - End of configuration. [testng] [2024-09-27 08:16:19,853] [pool-1-thread-10] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-09-27 08:16:19,895] [pool-1-thread-8] Initializing /data/samples/Sun.png: [testng] [2024-09-27 08:16:19,910] [pool-1-thread-7] Initializing /data/samples/atom.png: [testng] [2024-09-27 08:16:19,922] [pool-1-thread-4] Initializing /data/samples/daniel_coltri_two.png: [testng] [2024-09-27 08:16:19,937] [pool-1-thread-5] Initializing /data/qa-7473/n.tif: [testng] [2024-09-27 08:16:20,374] [pool-1-thread-2] Initializing /data/samples/william_wong05.png: [testng] [2024-09-27 08:16:20,389] [pool-1-thread-3] Initializing /data/samples/joanna_viera01.png: [testng] [2024-09-27 08:16:20,403] [pool-1-thread-9] Initializing /data/colin/test.sfstdge.png: [testng] [2024-09-27 08:16:20,421] [pool-1-thread-11] Initializing /data/samples/chompy2.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS