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Started by upstream project "BIOFORMATS-test-repo" build number 202 originally caused by: Started by upstream project "Trigger" build number 228 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins3400569061758017342.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32089_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:18:38,970 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:18:38,972 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 08:18:38,972 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:18:38,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:18:38,973 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:18:38,973 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:18:38,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:18:38,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:18:38,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:18:38,975 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:18:38,975 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:18:38,975 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:18:39,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:18:39,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:18:39,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:18:39,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:18:39,267 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:18:39,267 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:18:39,267 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:18:39,267 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:18:39,267 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 08:18:39,268 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 08:18:39,268 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 294 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-27 08:18:39,278] [main] java.version = 1.8.0_342 [testng] 08:18:39,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:18:39,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:18:39,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-27_08-18-39.log] [testng] 08:18:39,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-27 08:18:39,332] [main] testng.directory = /data [testng] [2024-09-27 08:18:39,332] [main] testng.configDirectory = /config [testng] [2024-09-27 08:18:39,344] [main] testng.multiplier = 1.0 [testng] [2024-09-27 08:18:39,345] [main] testng.in-memory = false [testng] [2024-09-27 08:18:39,345] [main] testng.allow-missing = false [testng] [2024-09-27 08:18:39,345] [main] user.language = en [testng] [2024-09-27 08:18:39,345] [main] user.country = ${user.country} [testng] [2024-09-27 08:18:39,345] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-27 08:20:38,405] [main] ---------------------------------------- [testng] [2024-09-27 08:20:38,405] [main] Total files: 15735 [testng] [2024-09-27 08:20:38,406] [main] Scan time: 119.06 s (7 ms/file) [testng] [2024-09-27 08:20:38,406] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-27 08:22:37,188] [pool-1-thread-1] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] 08:22:37,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:22:37,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:37,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-27_08-22-37.log] [testng] 08:22:37,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4feb830d - End of configuration. [testng] [2024-09-27 08:22:37,638] [pool-1-thread-12] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] 08:22:37,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:22:37,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:37,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-27_08-22-37.log] [testng] 08:22:37,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d99bcdf - End of configuration. [testng] [2024-09-27 08:22:38,391] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] 08:22:38,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:22:38,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:38,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-27_08-22-38.log] [testng] 08:22:38,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4678b7e - End of configuration. [testng] [2024-09-27 08:22:38,877] [pool-1-thread-10] Initializing /data/converted/lior/live+cf2b.tif: [testng] 08:22:38,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:22:38,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:38,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-27_08-22-38.log] [testng] 08:22:38,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cae4191 - End of configuration. [testng] [2024-09-27 08:22:39,407] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] 08:22:39,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:22:39,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:39,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-27_08-22-39.log] [testng] 08:22:39,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@775a0a4f - End of configuration. [testng] [2024-09-27 08:22:40,021] [pool-1-thread-8] Initializing /data/converted/converted/damian-compressed.tif: [testng] 08:22:40,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:22:40,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:40,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-27_08-22-40.log] [testng] 08:22:40,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@585e7b05 - End of configuration. [testng] [2024-09-27 08:22:40,469] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] 08:22:40,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:22:40,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:40,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-27_08-22-40.log] [testng] 08:22:40,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f759fde - End of configuration. [testng] [2024-09-27 08:22:41,084] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] 08:22:41,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:22:41,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:41,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-27_08-22-41.log] [testng] 08:22:41,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73b0116b - End of configuration. [testng] [2024-09-27 08:22:41,712] [pool-1-thread-5] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] 08:22:41,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:22:41,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:41,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-27_08-22-41.log] [testng] 08:22:41,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@213fd4fc - End of configuration. [testng] [2024-09-27 08:22:42,419] [pool-1-thread-4] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] 08:22:42,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:22:42,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:42,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-27_08-22-42.log] [testng] 08:22:42,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49812d46 - End of configuration. [testng] [2024-09-27 08:22:42,944] [pool-1-thread-3] Initializing /data/converted/lior/live+cf5b.tif: [testng] 08:22:42,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:22:42,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:42,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-27_08-22-42.log] [testng] 08:22:42,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a8d2915 - End of configuration. [testng] [2024-09-27 08:22:43,362] [pool-1-thread-2] Initializing /data/converted/converted/mri-stack.tif: [testng] 08:22:43,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:22:43,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:43,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-27_08-22-43.log] [testng] 08:22:43,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72068b5e - End of configuration. [testng] [2024-09-27 08:23:02,593] [pool-1-thread-2] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-09-27 08:23:03,715] [pool-1-thread-8] Initializing /data/scott/Slide133-11.tif: [testng] [2024-09-27 08:23:04,417] [pool-1-thread-1] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-09-27 08:23:50,965] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-09-27 08:23:52,323] [pool-1-thread-2] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-09-27 08:23:53,029] [pool-1-thread-10] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-09-27 08:23:57,847] [pool-1-thread-8] Initializing /data/converted/dietmar/137.tif: [testng] [2024-09-27 08:24:00,417] [pool-1-thread-1] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-09-27 08:24:28,792] [pool-1-thread-2] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-09-27 08:24:54,469] [pool-1-thread-11] Initializing /data/converted/michel/a.tif: [testng] [2024-09-27 08:25:06,240] [pool-1-thread-11] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-09-27 08:25:24,504] [pool-1-thread-11] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-09-27 08:27:20,178] [pool-1-thread-1] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-09-27 08:28:23,061] [pool-1-thread-11] Initializing /data/scott/Slide133-04.tif: [testng] [2024-09-27 08:28:28,863] [pool-1-thread-10] Initializing /data/converted/converted/2chz.tif: [testng] [2024-09-27 08:28:50,154] [pool-1-thread-11] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-09-27 08:28:56,191] [pool-1-thread-9] Initializing /data/scott/Slide133-01.tif: [testng] [2024-09-27 08:29:12,444] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-09-27 08:29:26,529] [pool-1-thread-7] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-09-27 08:29:30,677] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-09-27 08:29:33,278] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-09-27 08:29:45,473] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-09-27 08:29:57,475] [pool-1-thread-1] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-09-27 08:30:16,433] [pool-1-thread-11] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-09-27 08:30:21,275] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-09-27 08:30:40,050] [pool-1-thread-1] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-09-27 08:30:51,574] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-09-27 08:30:54,149] [pool-1-thread-12] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-09-27 08:31:16,412] [pool-1-thread-12] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-09-27 08:31:29,262] [pool-1-thread-10] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-09-27 08:32:05,213] [pool-1-thread-10] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-09-27 08:32:43,721] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-09-27 08:32:45,255] [pool-1-thread-2] Initializing /data/converted/michel/b.tif: [testng] [2024-09-27 08:33:18,864] [pool-1-thread-1] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-09-27 08:33:22,104] [pool-1-thread-2] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-09-27 08:33:57,886] [pool-1-thread-11] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-09-27 08:34:26,446] [pool-1-thread-11] Initializing /data/scott/Slide133-08.tif: [testng] [2024-09-27 08:34:27,810] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-09-27 08:34:58,079] [pool-1-thread-11] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-09-27 08:35:14,507] [pool-1-thread-2] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-09-27 08:35:21,250] [pool-1-thread-11] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-09-27 08:35:31,320] [pool-1-thread-10] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-09-27 08:36:06,413] [pool-1-thread-11] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-09-27 08:37:16,490] [pool-1-thread-9] Initializing /data/othmar/mozaic.tif: [testng] [2024-09-27 08:38:03,337] [pool-1-thread-8] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-09-27 08:38:21,489] [pool-1-thread-8] Initializing /data/converted/nicolas/image.tif: [testng] [2024-09-27 08:38:42,260] [pool-1-thread-8] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-09-27 08:38:46,172] [pool-1-thread-5] Initializing /data/converted/converted/damian.tif: [testng] [2024-09-27 08:38:56,773] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-09-27 08:39:09,574] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-09-27 08:39:26,145] [pool-1-thread-6] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-09-27 08:40:47,953] [pool-1-thread-4] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-09-27 08:40:51,686] [pool-1-thread-9] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-09-27 08:41:14,010] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-09-27 08:41:15,928] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-09-27 08:41:29,274] [pool-1-thread-1] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-09-27 08:42:45,381] [pool-1-thread-1] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-09-27 08:43:06,509] [pool-1-thread-1] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-09-27 08:43:08,633] [pool-1-thread-8] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-09-27 08:43:33,505] [pool-1-thread-8] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-09-27 08:44:04,652] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-09-27 08:44:19,109] [pool-1-thread-4] Initializing /data/converted/michel/e.tif: [testng] [2024-09-27 08:44:58,893] [pool-1-thread-11] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-09-27 08:45:10,442] [pool-1-thread-4] Initializing /data/converted/sebastien/test.tif: [testng] [2024-09-27 08:45:19,804] [pool-1-thread-5] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2024-09-27 08:46:39,294] [pool-1-thread-9] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-09-27 08:47:04,351] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-09-27 08:47:10,470] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-09-27 08:47:17,884] [pool-1-thread-8] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-09-27 08:47:51,060] [pool-1-thread-6] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-09-27 08:50:49,276] [pool-1-thread-10] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-09-27 08:54:37,053] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-09-27 08:55:35,771] [pool-1-thread-7] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-09-27 08:56:36,002] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-09-27 08:56:37,662] [pool-1-thread-9] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-09-27 08:57:01,036] [pool-1-thread-3] Initializing /data/converted/dietmar/138.tif: [testng] [2024-09-27 08:59:59,929] [pool-1-thread-9] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-09-27 09:00:28,959] [pool-1-thread-9] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-09-27 09:00:57,012] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-09-27 09:01:41,579] [pool-1-thread-4] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-09-27 09:03:49,462] [pool-1-thread-3] Initializing /data/converted/michel/c.tif: [testng] [2024-09-27 09:04:18,135] [pool-1-thread-11] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-09-27 09:04:27,503] [pool-1-thread-3] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-09-27 09:04:50,246] [pool-1-thread-11] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-09-27 09:05:03,736] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-09-27 09:05:13,334] [pool-1-thread-11] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-09-27 09:05:42,084] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-09-27 09:06:20,039] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-09-27 09:07:43,639] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-09-27 09:08:04,585] [pool-1-thread-4] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-09-27 09:08:45,593] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-09-27 09:09:00,275] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-09-27 09:09:38,216] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-09-27 09:10:35,590] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-09-27 09:11:38,977] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-09-27 09:12:28,847] [pool-1-thread-3] Initializing /data/converted/michel/d.tif: [testng] [2024-09-27 09:12:39,626] [pool-1-thread-11] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-09-27 09:12:54,263] [pool-1-thread-3] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-09-27 09:13:32,221] [pool-1-thread-10] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-09-27 09:13:49,603] [pool-1-thread-10] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-09-27 09:13:56,967] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-09-27 09:14:00,378] [pool-1-thread-11] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-09-27 09:14:48,333] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-09-27 09:14:52,711] [pool-1-thread-4] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-09-27 09:15:11,319] [pool-1-thread-11] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-09-27 09:15:26,021] [pool-1-thread-1] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-09-27 09:15:47,615] [pool-1-thread-11] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-09-27 09:16:05,151] [pool-1-thread-9] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-09-27 09:16:10,633] [pool-1-thread-4] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-09-27 09:16:16,369] [pool-1-thread-1] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-09-27 09:16:32,961] [pool-1-thread-4] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-09-27 09:16:47,862] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-09-27 09:16:57,762] [pool-1-thread-5] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] 09:53:41,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:53:41,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:41,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-27_09-53-41.log] [testng] 09:53:41,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e30265 - End of configuration. [testng] 09:56:01,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:56:01,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:56:01,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-27_09-56-01.log] [testng] 09:56:01,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ff9a06 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 97 minutes 26 seconds Finished: SUCCESS