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Started by upstream project "BIOFORMATS-test-repo" build number 202 originally caused by: Started by upstream project "Trigger" build number 228 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins13875848118652658750.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32116_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:15:45,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:15:45,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 09:15:45,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:15:45,870 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:15:45,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:15:45,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:15:45,871 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:15:45,871 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:15:45,872 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:15:45,872 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:15:45,872 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:15:45,872 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:15:46,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:15:46,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:15:46,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:15:46,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:15:46,156 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:15:46,156 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:15:46,156 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:15:46,157 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:15:46,157 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 09:15:46,158 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 09:15:46,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-27 09:15:46,170] [main] java.version = 1.8.0_342 [testng] 09:15:46,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:15:46,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:46,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-27_09-15-46.log] [testng] 09:15:46,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-27 09:15:46,224] [main] testng.directory = /data [testng] [2024-09-27 09:15:46,224] [main] testng.configDirectory = /config [testng] [2024-09-27 09:15:46,237] [main] testng.multiplier = 1.0 [testng] [2024-09-27 09:15:46,237] [main] testng.in-memory = false [testng] [2024-09-27 09:15:46,238] [main] testng.allow-missing = false [testng] [2024-09-27 09:15:46,238] [main] user.language = en [testng] [2024-09-27 09:15:46,238] [main] user.country = ${user.country} [testng] [2024-09-27 09:15:46,238] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-27 09:16:12,264] [main] ---------------------------------------- [testng] [2024-09-27 09:16:12,264] [main] Total files: 31 [testng] [2024-09-27 09:16:12,264] [main] Scan time: 26.026 s (839 ms/file) [testng] [2024-09-27 09:16:12,264] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-27 09:16:38,711] [pool-1-thread-1] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 09:16:38,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:16:38,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:38,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-27_09-16-38.log] [testng] 09:16:38,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@360a5a3f - End of configuration. [testng] [2024-09-27 09:16:39,598] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jpc: [testng] 09:16:39,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:16:39,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:39,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-27_09-16-39.log] [testng] 09:16:39,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24db4b1e - End of configuration. [testng] [2024-09-27 09:16:40,459] [pool-1-thread-11] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 09:16:40,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:16:40,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:40,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-27_09-16-40.log] [testng] 09:16:40,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fddc63a - End of configuration. [testng] [2024-09-27 09:16:41,295] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jbig: [testng] 09:16:41,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:16:41,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:41,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-27_09-16-41.log] [testng] 09:16:41,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632a0ad9 - End of configuration. [testng] [2024-09-27 09:16:43,573] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 09:16:43,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:16:43,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:43,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-27_09-16-43.log] [testng] 09:16:43,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a527551 - End of configuration. [testng] [2024-09-27 09:16:45,830] [pool-1-thread-8] Initializing /data/big-images/8kx8k.jpf: [testng] 09:16:45,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:16:45,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:45,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-27_09-16-45.log] [testng] 09:16:45,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46bee485 - End of configuration. [testng] [2024-09-27 09:16:46,598] [pool-1-thread-7] Initializing /data/vikram/Captured 3.jp2: [testng] 09:16:46,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:16:46,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:46,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-27_09-16-46.log] [testng] 09:16:46,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@499cce33 - End of configuration. [testng] [2024-09-27 09:16:47,818] [pool-1-thread-6] Initializing /data/frans/flower.jp2: [testng] 09:16:47,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:16:47,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:47,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-27_09-16-47.log] [testng] 09:16:47,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49581f4f - End of configuration. [testng] [2024-09-27 09:16:48,565] [pool-1-thread-5] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 09:16:48,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:16:48,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:48,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-27_09-16-48.log] [testng] 09:16:48,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@516cf70d - End of configuration. [testng] [2024-09-27 09:16:49,278] [pool-1-thread-4] Initializing /data/david/multichannel-2d test.jp2: [testng] 09:16:49,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:16:49,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:49,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-27_09-16-49.log] [testng] 09:16:49,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10b6c96b - End of configuration. [testng] [2024-09-27 09:16:49,989] [pool-1-thread-3] Initializing /data/venu/Multichannel 3a.jpg: [testng] 09:16:49,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:16:49,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:49,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-27_09-16-49.log] [testng] 09:16:50,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65b08ddb - End of configuration. [testng] [2024-09-27 09:16:50,198] [pool-1-thread-2] Initializing /data/vikram/Captured 4.jp2: [testng] 09:16:50,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:16:50,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:50,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-27_09-16-50.log] [testng] 09:16:50,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f086ff6 - End of configuration. [testng] [2024-09-27 09:16:56,606] [pool-1-thread-3] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-09-27 09:16:58,241] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2: [testng] [2024-09-27 09:16:59,224] [pool-1-thread-7] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-09-27 09:17:00,191] [pool-1-thread-2] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-09-27 09:17:03,480] [pool-1-thread-10] Initializing /data/big-images/2kx2k.jpf: [testng] [2024-09-27 09:17:04,281] [pool-1-thread-9] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-09-27 09:17:05,342] [pool-1-thread-1] Initializing /data/vikram/Captured 5.jp2: [testng] [2024-09-27 09:17:08,325] [pool-1-thread-12] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-09-27 09:17:09,470] [pool-1-thread-2] Initializing /data/kraig/head.jp2: [testng] [2024-09-27 09:17:11,290] [pool-1-thread-11] Initializing /data/david/000000_000001.jpx: [testng] [2024-09-27 09:17:13,394] [pool-1-thread-1] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2024-09-27 09:17:15,131] [pool-1-thread-3] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-09-27 09:17:15,671] [pool-1-thread-6] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-09-27 09:17:16,734] [pool-1-thread-9] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-09-27 09:17:23,022] [pool-1-thread-2] Initializing /data/david/cy5-tph.jp2: [testng] [2024-09-27 09:17:24,798] [pool-1-thread-7] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-09-27 09:17:26,072] [pool-1-thread-10] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-09-27 09:17:31,910] [pool-1-thread-11] Initializing /data/vikram/Captured 1.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 34 seconds Finished: SUCCESS