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Started by upstream project "BIOFORMATS-test-repo" build number 203 originally caused by: Started by upstream project "Trigger" build number 229 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins4358523232301259776.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32136_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:22:08,489 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:08,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:22:08,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:08,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:08,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:08,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:08,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:08,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:08,494 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:08,494 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:08,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:08,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:08,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:08,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:08,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:08,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:08,697 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:08,697 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:08,697 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:08,698 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:08,698 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:22:08,699 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:22:08,699 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-28 01:22:08,707] [main] java.version = 11.0.16 [testng] 01:22:08,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:08,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:08,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-28_01-22-08.log] [testng] 01:22:08,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-28 01:22:08,754] [main] testng.directory = /data [testng] [2024-09-28 01:22:08,754] [main] testng.configDirectory = /config [testng] [2024-09-28 01:22:08,763] [main] testng.multiplier = 1.0 [testng] [2024-09-28 01:22:08,764] [main] testng.in-memory = false [testng] [2024-09-28 01:22:08,764] [main] testng.allow-missing = false [testng] [2024-09-28 01:22:08,764] [main] user.language = en [testng] [2024-09-28 01:22:08,764] [main] user.country = ${user.country} [testng] [2024-09-28 01:22:08,765] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-28 01:22:53,823] [main] ---------------------------------------- [testng] [2024-09-28 01:22:53,823] [main] Total files: 4426 [testng] [2024-09-28 01:22:53,823] [main] Scan time: 45.058 s (10 ms/file) [testng] [2024-09-28 01:22:53,823] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-28 01:32:05,335] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x32.tiff: [testng] 01:32:05,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:32:05,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:05,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-28_01-32-05.log] [testng] 01:32:05,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a25e9f - End of configuration. [testng] [2024-09-28 01:32:05,814] [pool-1-thread-12] Initializing /data/paulh/quickpollen4_w1_t1.tif: [testng] 01:32:05,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:32:05,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:05,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-28_01-32-05.log] [testng] 01:32:05,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16bdb2d1 - End of configuration. [testng] [2024-09-28 01:32:06,409] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z024.tif: [testng] 01:32:06,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:32:06,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:06,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-28_01-32-06.log] [testng] 01:32:06,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45b8349a - End of configuration. [testng] [2024-09-28 01:32:07,157] [pool-1-thread-10] Initializing /data/brian/CurrentSystems.tiff: [testng] 01:32:07,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:32:07,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:07,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-28_01-32-07.log] [testng] 01:32:07,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@673fa082 - End of configuration. [testng] [2024-09-28 01:32:07,676] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] 01:32:07,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:32:07,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:07,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-28_01-32-07.log] [testng] 01:32:07,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b4a9348 - End of configuration. [testng] [2024-09-28 01:32:08,136] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z048.tif: [testng] 01:32:08,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:32:08,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:08,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-28_01-32-08.log] [testng] 01:32:08,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18f8c8f1 - End of configuration. [testng] [2024-09-28 01:32:08,575] [pool-1-thread-7] Initializing /data/ascb/FND-22_FawcettLongitudinalMammalian_4800.tif: [testng] 01:32:08,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:32:08,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:08,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-28_01-32-08.log] [testng] 01:32:08,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fb5c04b - End of configuration. [testng] [2024-09-28 01:32:08,957] [pool-1-thread-6] Initializing /data/public/libtiff/quad-tile.tif: [testng] 01:32:08,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:32:08,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:08,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-28_01-32-08.log] [testng] 01:32:08,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dbf1ebd - End of configuration. [testng] [2024-09-28 01:32:09,571] [pool-1-thread-5] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] 01:32:09,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:32:09,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:09,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-28_01-32-09.log] [testng] 01:32:09,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76c3d019 - End of configuration. [testng] [2024-09-28 01:32:10,252] [pool-1-thread-4] Initializing /data/josiah/cell-Z18.C0.tiff: [testng] 01:32:10,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:32:10,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-28_01-32-10.log] [testng] 01:32:10,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63cc6056 - End of configuration. [testng] [2024-09-28 01:32:10,684] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] 01:32:10,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:32:10,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-28_01-32-10.log] [testng] 01:32:10,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12237a04 - End of configuration. [testng] [2024-09-28 01:32:11,100] [pool-1-thread-2] Initializing /data/jay/10-crop-Stack.tif: [testng] 01:32:11,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:32:11,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:11,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-28_01-32-11.log] [testng] 01:32:11,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@467069b8 - End of configuration. [testng] [2024-09-28 01:32:15,124] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-09-28 01:32:15,913] [pool-1-thread-11] Initializing /data/josiah/cell-Z7.C1.tiff: [testng] [2024-09-28 01:32:16,208] [pool-1-thread-8] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2024-09-28 01:32:16,459] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-09-28 01:32:16,669] [pool-1-thread-4] Initializing /data/public/condensation/E4.pattern9.tif: [testng] [2024-09-28 01:32:16,954] [pool-1-thread-2] Initializing /data/josiah/cell-Z21.C0.tiff: [testng] [2024-09-28 01:32:17,474] [pool-1-thread-3] Initializing /data/samples/melissa/strike-uncompressed.tiff: [testng] [2024-09-28 01:32:18,130] [pool-1-thread-6] Initializing /data/josiah/cell-Z17.C1.tiff: [testng] [2024-09-28 01:32:18,599] [pool-1-thread-5] Initializing /data/big-images/8kx8k.tif: [testng] [2024-09-28 01:32:18,960] [pool-1-thread-9] Initializing /data/julien/AVECCHRO.TIF: [testng] [2024-09-28 01:32:19,322] [pool-1-thread-10] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-09-28 01:32:23,322] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z043.tif: [testng] [2024-09-28 01:32:23,960] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z009.tif: [testng] [2024-09-28 01:32:24,549] [pool-1-thread-9] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-09-28 01:32:25,134] [pool-1-thread-3] Initializing /data/public/libtiff/quad-jpeg.tif: [testng] [2024-09-28 01:32:25,493] [pool-1-thread-2] Initializing /data/wayne/screen-rgb.tiff: [testng] [2024-09-28 01:32:25,909] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z019.tif: [testng] [2024-09-28 01:32:26,604] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0214.TIF: [testng] [2024-09-28 01:32:27,470] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0234.TIF: [testng] [2024-09-28 01:32:28,419] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z050.tif: [testng] [2024-09-28 01:32:29,396] [pool-1-thread-4] Initializing /data/josiah/cell-Z37.C0.tiff: [testng] [2024-09-28 01:32:30,792] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-09-28 01:32:34,182] [pool-1-thread-1] Initializing /data/wayne/MyoblastCells-8bit.tiff: [testng] [2024-09-28 01:32:35,651] [pool-1-thread-7] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-09-28 01:32:37,288] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z057.tif: [testng] [2024-09-28 01:32:37,958] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] [2024-09-28 01:32:38,548] [pool-1-thread-4] Initializing /data/ascb/CYT-93_PasolliMouse1c_4800.tif: [testng] [2024-09-28 01:32:39,236] [pool-1-thread-12] Initializing /data/tom-kazimiers/test_exiftool2.tiff: [testng] [2024-09-28 01:32:39,904] [pool-1-thread-11] Initializing /data/public/libtiff/jello.tif: [testng] [2024-09-28 01:32:40,555] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z007.tif: [testng] [2024-09-28 01:32:41,207] [pool-1-thread-6] Initializing /data/public/condensation/B12.pattern4.tif: [testng] [2024-09-28 01:32:41,860] [pool-1-thread-2] Initializing /data/josiah/cell-Z7.C0.tiff: [testng] [2024-09-28 01:32:42,398] [pool-1-thread-9] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-09-28 01:32:46,887] [pool-1-thread-1] Initializing /data/victoria/scan4_1hr_20X_.352g_n180p_2z_0.387644res_9int_C2_TP1.tiff: [testng] [2024-09-28 01:32:49,324] [pool-1-thread-8] Initializing /data/tom/TLD - n000000_Stamp.tif: [testng] [2024-09-28 01:32:52,689] [pool-1-thread-3] Initializing /data/lzw/BoutonVsAxon.tif: [testng] [2024-09-28 01:32:54,500] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z009.tif: [testng] [2024-09-28 01:32:55,471] [pool-1-thread-12] 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Initializing /data/curtis/map/the-quick: [testng] [2024-09-28 01:39:03,095] [pool-1-thread-12] Initializing /data/tobias/test002_1.tif: [testng] [2024-09-28 01:39:03,272] [pool-1-thread-9] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-09-28 01:39:03,422] [pool-1-thread-1] Initializing /data/lzw/test.tif: [testng] [2024-09-28 01:39:03,565] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0247.TIF: [testng] [2024-09-28 01:39:03,742] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z008.tif: [testng] [2024-09-28 01:39:04,723] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] [2024-09-28 01:39:05,176] [pool-1-thread-10] Initializing /data/josh/3D Projections of stack.tif: [testng] [2024-09-28 01:39:06,031] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z018.tif: [testng] [2024-09-28 01:39:06,545] [pool-1-thread-4] Initializing /data/david/200umbeads_stack_1fs.tif: [testng] [2024-09-28 01:39:06,791] [pool-1-thread-1] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-09-28 01:39:09,625] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z022.tif: [testng] [2024-09-28 01:39:10,217] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z006.tif: [testng] [2024-09-28 01:39:10,445] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0203.TIF: [testng] [2024-09-28 01:39:10,625] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-09-28 01:39:11,807] [pool-1-thread-10] Initializing /data/jayne/Zst_13/WTERZ2_Series13_z000_ch00.tif: [testng] [2024-09-28 01:39:12,195] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0224.TIF: [testng] [2024-09-28 01:39:12,478] [pool-1-thread-9] Initializing /data/josiah/cell-Z1.C1.tiff: [testng] [2024-09-28 01:39:12,756] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z016.tif: [testng] [2024-09-28 01:39:13,105] [pool-1-thread-6] Initializing /data/christine/Image5D_4color test stack/RGB from I5D.tif: [testng] [2024-09-28 01:39:13,425] [pool-1-thread-8] Initializing /data/ascb/FND-11_PorterPaladeEarly_4800.tif: [testng] [2024-09-28 01:39:13,975] [pool-1-thread-7] Initializing /data/wayne/mBoeglin_lzw/mm7.1.2.0_07.tif: [testng] [2024-09-28 01:39:14,090] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z022.tif: [testng] [2024-09-28 01:39:15,181] [pool-1-thread-9] Initializing /data/jeff/erdas_spnad83.tif: [testng] [2024-09-28 01:39:15,411] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs007.TIF: [testng] [2024-09-28 01:39:15,625] [pool-1-thread-4] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-09-28 01:39:20,422] [pool-1-thread-6] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-09-28 01:39:20,646] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z024.tif: [testng] [2024-09-28 01:39:21,238] [pool-1-thread-3] Initializing 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[2024-09-28 01:39:32,781] [pool-1-thread-2] Initializing /data/brian/datamanager.tiff: [testng] [2024-09-28 01:39:32,999] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z025.tif: [testng] [2024-09-28 01:39:33,125] [pool-1-thread-9] Initializing /data/josiah/cell-Z10.C0.tiff: [testng] [2024-09-28 01:39:33,659] [pool-1-thread-12] Initializing /data/curtis/test1.tiff: [testng] [2024-09-28 01:39:34,454] [pool-1-thread-8] Initializing /data/julien/Chadisoukkarieh6.TIF: [testng] [2024-09-28 01:39:35,365] [pool-1-thread-5] Initializing /data/tamjid/10_para-stage 1.tiff: [testng] [2024-09-28 01:39:35,862] [pool-1-thread-7] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-09-28 01:39:36,123] [pool-1-thread-9] Initializing /data/josiah/cell-Z28.C0.tiff: [testng] [2024-09-28 01:39:36,389] [pool-1-thread-12] Initializing /data/wayne/clown-rgb.tif: [testng] [2024-09-28 01:39:37,757] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-09-28 01:39:38,220] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs001.TIF: [testng] [2024-09-28 01:39:38,484] [pool-1-thread-8] Initializing /data/imagesc-82872/SG11410002_253174651388_S001.tif: [testng] [2024-09-28 01:39:38,793] [pool-1-thread-9] Initializing /data/paulh/quickpollen4_w2_t1.tif: [testng] [2024-09-28 01:39:39,073] [pool-1-thread-10] Initializing /data/sub-resolution/Leica-3/Leica-3-subifds.tiff: [testng] [2024-09-28 01:39:39,343] [pool-1-thread-7] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-09-28 01:39:39,588] [pool-1-thread-12] Initializing /data/ascb/bad/FND-17_FawcettNucleus_4800.tif: [testng] [2024-09-28 01:39:40,675] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z044.tif: [testng] [2024-09-28 01:39:41,909] [pool-1-thread-11] Initializing /data/ascb/CYT-43_HowellAcinarUnlabeled_4800.tif: [testng] [2024-09-28 01:39:43,211] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0240.TIF: [testng] 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[testng] [2024-09-28 01:39:54,973] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z037.tif: [testng] [2024-09-28 01:39:55,191] [pool-1-thread-7] Initializing /data/damian/33m.tiff: [testng] [2024-09-28 01:39:55,467] [pool-1-thread-1] Initializing /data/josiah/cell-Z38.C1.tiff: [testng] [2024-09-28 01:39:56,770] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] [2024-09-28 01:39:56,983] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0208.TIF: [testng] [2024-09-28 01:39:57,161] [pool-1-thread-4] Initializing /data/stephane/001_z01.tif: [testng] [2024-09-28 01:39:57,453] [pool-1-thread-5] Initializing /data/julien/Genevievevanille.TIF: [testng] [2024-09-28 01:39:57,705] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z046.tif: [testng] [2024-09-28 01:39:57,995] [pool-1-thread-3] Initializing /data/julien/baldinsug1LMP2col.TIF: [testng] [2024-09-28 01:39:58,868] [pool-1-thread-1] Initializing 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Initializing /data/brian/retina/retina_C1_Z061.tif: [testng] [2024-09-28 01:40:14,709] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z014.tif: [testng] [2024-09-28 01:40:14,843] [pool-1-thread-2] Initializing /data/stephane/test sortie_t0000_z0000.tif: [testng] [2024-09-28 01:40:14,979] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z041.tif: [testng] [2024-09-28 01:40:15,215] [pool-1-thread-6] Initializing /data/public/condensation/C4.pattern5.tif: [testng] [2024-09-28 01:40:15,398] [pool-1-thread-11] Initializing /data/public/condensation/E4.pattern7.tif: [testng] [2024-09-28 01:40:15,765] [pool-1-thread-5] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-09-28 01:40:16,542] [pool-1-thread-1] Initializing /data/samples/melissa/imagej-4gb/4gb-test&sizeX=1024&sizeY=1024&pixelType=uint16&sizeC=2050.fake: [testng] [2024-09-28 01:40:16,610] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0249.TIF: [testng] [2024-09-28 01:40:16,840] [pool-1-thread-4] Initializing /data/julien/Bialic_CellulesNinja.tif: [testng] [2024-09-28 01:40:16,987] [pool-1-thread-2] Initializing /data/ascb/FND-26a_PaladeGlycogenLabeled_4800.tif: [testng] [2024-09-28 01:40:20,193] [pool-1-thread-9] Initializing /data/damian/18m.tiff: [testng] [2024-09-28 01:40:21,064] [pool-1-thread-10] Initializing /data/josiah/cell-Z27.C1.tiff: [testng] [2024-09-28 01:40:21,289] [pool-1-thread-6] Initializing /data/zstd-compressed/yeast.tif: [testng] [2024-09-28 01:40:21,572] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0239.TIF: [testng] [2024-09-28 01:40:21,794] [pool-1-thread-5] Initializing /data/josiah/cell-Z30.C1.tiff: [testng] [2024-09-28 01:40:22,641] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z002.tif: [testng] [2024-09-28 01:40:22,926] [pool-1-thread-3] Initializing /data/public/libtiff/caspian.tif: [testng] [2024-09-28 01:40:23,566] [pool-1-thread-4] Initializing /data/public/condensation/C4.pattern8.tif: [testng] [2024-09-28 01:40:23,781] [pool-1-thread-9] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-09-28 01:40:24,134] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z002.tif: [testng] [2024-09-28 01:40:24,702] [pool-1-thread-5] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] [2024-09-28 01:40:24,950] [pool-1-thread-6] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-09-28 01:40:25,294] [pool-1-thread-11] Initializing /data/ascb/CYT-146_Fader_Distribution.tif: [testng] [2024-09-28 01:40:25,876] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2024-09-28 01:40:26,220] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-09-28 01:40:26,690] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z027.tif: [testng] [2024-09-28 01:40:26,985] [pool-1-thread-4] Initializing 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01:40:32,929] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs015.TIF: [testng] [2024-09-28 01:40:33,592] [pool-1-thread-6] Initializing /data/josiah/cell-Z22.C1.tiff: [testng] [2024-09-28 01:40:34,024] [pool-1-thread-1] Initializing /data/misc/mri.eps: [testng] [2024-09-28 01:40:35,489] [pool-1-thread-1] Initializing /data/ascb/bad/FND-20_FawcettLongitudinalMidpieces_4800.tif: [testng] [2024-09-28 01:40:35,768] [pool-1-thread-9] Initializing /data/public/condensation/B12.pattern2.tif: [testng] [2024-09-28 01:40:36,101] [pool-1-thread-8] Initializing /data/alexa/test4.tif: [testng] [2024-09-28 01:40:36,317] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z018.tif: [testng] [2024-09-28 01:40:36,604] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z014.tif: [testng] [2024-09-28 01:40:36,902] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z017.tif: [testng] [2024-09-28 01:40:37,241] [pool-1-thread-4] Initializing /data/samples/cielab/SKI_TC803_rel.tif: [testng] [2024-09-28 01:40:38,956] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z021.tif: [testng] [2024-09-28 01:40:39,737] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0207.TIF: [testng] [2024-09-28 01:40:40,753] [pool-1-thread-10] Initializing /data/julien/EmmanuelVignalchewingfraise.TIF: [testng] [2024-09-28 01:40:41,042] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0237.TIF: [testng] [2024-09-28 01:40:41,317] [pool-1-thread-7] Initializing /data/misc/mri-new.mov: [testng] [2024-09-28 01:40:41,391] [pool-1-thread-3] Initializing /data/ascb/FND-24_GeorgeEPalade.tif: [testng] [2024-09-28 01:40:41,725] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z056.tif: [testng] [2024-09-28 01:40:43,235] [pool-1-thread-7] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-09-28 01:40:43,558] [pool-1-thread-6] Initializing /data/michael/s8.tiff: [testng] [2024-09-28 01:40:44,468] 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[2024-09-28 01:41:03,586] [pool-1-thread-6] Initializing /data/john/C100915-MA_AXIS_LEH_IMAGE_KIND_FLAT_ICE_3.tif: [testng] [2024-09-28 01:41:04,679] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z011.tif: [testng] [2024-09-28 01:41:05,089] [pool-1-thread-4] Initializing /data/jcb/SuppFig5D.tif: [testng] [2024-09-28 01:41:05,301] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] [2024-09-28 01:41:05,572] [pool-1-thread-1] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-09-28 01:41:06,055] [pool-1-thread-11] Initializing /data/sub-resolution/Leica-2/Leica-2-subifds.tiff: [testng] [2024-09-28 01:41:06,472] [pool-1-thread-9] Initializing /data/public/condensation/A5.pattern3.tif: [testng] [2024-09-28 01:41:06,768] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-05.tiff: [testng] [2024-09-28 01:41:06,934] [pool-1-thread-6] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2024-09-28 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/data/ascb/CYT-90_PasolliMousePanoramic_4800.tif: [testng] [2024-09-28 01:41:21,609] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips_fourteen.tiff: [testng] [2024-09-28 01:41:22,314] [pool-1-thread-10] Initializing /data/chris-lesiak/half-float.tiff: [testng] [2024-09-28 01:41:22,568] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z003.tif: [testng] [2024-09-28 01:41:22,803] [pool-1-thread-5] Initializing /data/sarah/FITC left 100% 1x mag00000.tif: [testng] [2024-09-28 01:41:23,030] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z019.tif: [testng] [2024-09-28 01:41:23,345] [pool-1-thread-6] Initializing /data/ascb/CYT-50_FriendSecretoryPairA_4800.tif: [testng] [2024-09-28 01:41:23,664] [pool-1-thread-11] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-09-28 01:41:24,827] [pool-1-thread-7] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-09-28 01:41:25,609] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x64.tiff: [testng] [2024-09-28 01:41:25,804] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0238.TIF: [testng] [2024-09-28 01:41:26,006] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x64.tiff: [testng] [2024-09-28 01:41:26,215] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z008.tif: [testng] [2024-09-28 01:41:26,458] [pool-1-thread-1] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] [2024-09-28 01:41:26,961] [pool-1-thread-11] Initializing /data/ascb/bad/FND-18_FawcettGolgi_4800.tif: [testng] [2024-09-28 01:41:27,935] [pool-1-thread-8] Initializing /data/josiah/cell-Z1.C0.tiff: [testng] [2024-09-28 01:41:28,833] [pool-1-thread-7] Initializing /data/christine/Image5D_4color test stack/test stack.tif: [testng] [2024-09-28 01:41:29,206] [pool-1-thread-12] Initializing /data/samples/melissa/imagej-4gb/4gb-imagej.tif: [testng] [2024-09-28 01:41:29,524] [pool-1-thread-2] Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-09-28 01:41:29,884] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z028.tif: [testng] [2024-09-28 01:41:30,144] [pool-1-thread-1] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-09-28 01:41:30,542] [pool-1-thread-3] Initializing /data/edward/TestDoc2.tif: [testng] [2024-09-28 01:41:30,916] [pool-1-thread-5] Initializing /data/ascb/FND-25a_PaladeGroupLabeled_4800.tif: [testng] [2024-09-28 01:41:33,626] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0246.TIF: [testng] [2024-09-28 01:41:34,408] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-05.tiff: [testng] [2024-09-28 01:41:35,256] [pool-1-thread-8] Initializing /data/josiah/cell-Z35.C1.tiff: [testng] [2024-09-28 01:41:35,512] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0248.TIF: [testng] [2024-09-28 01:41:35,833] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z004.tif: [testng] [2024-09-28 01:41:36,139] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z030.tif: [testng] [2024-09-28 01:41:36,487] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2024-09-28 01:41:36,743] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z053.tif: [testng] [2024-09-28 01:41:37,266] [pool-1-thread-9] Initializing /data/qa-7589/CalGrid.tif: [testng] [2024-09-28 01:41:37,534] [pool-1-thread-4] Initializing /data/public/libtiff/cramps-tile.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 minutes 57 seconds Finished: SUCCESS