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Started by upstream project "BIOFORMATS-test-repo" build number 203 originally caused by: Started by upstream project "Trigger" build number 229 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1329914619949278339.sh + '[' apng = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32251_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 03:34:59,138 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:34:59,150 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 03:34:59,150 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:34:59,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:34:59,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:34:59,153 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:34:59,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:34:59,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:34:59,154 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:34:59,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:34:59,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:34:59,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:34:59,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:34:59,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:34:59,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:34:59,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:34:59,369 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:34:59,369 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:34:59,369 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:34:59,370 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:34:59,370 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 03:34:59,371 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 03:34:59,371 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 217 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-28 03:34:59,380] [main] java.version = 11.0.16 [testng] 03:34:59,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:34:59,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:59,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-28_03-34-59.log] [testng] 03:34:59,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-28 03:34:59,431] [main] testng.directory = /data [testng] [2024-09-28 03:34:59,431] [main] testng.configDirectory = /config [testng] [2024-09-28 03:34:59,444] [main] testng.multiplier = 1.0 [testng] [2024-09-28 03:34:59,445] [main] testng.in-memory = false [testng] [2024-09-28 03:34:59,445] [main] testng.allow-missing = false [testng] [2024-09-28 03:34:59,445] [main] user.language = en [testng] [2024-09-28 03:34:59,446] [main] user.country = ${user.country} [testng] [2024-09-28 03:34:59,446] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-28 03:35:00,067] [main] ---------------------------------------- [testng] [2024-09-28 03:35:00,068] [main] Total files: 21 [testng] [2024-09-28 03:35:00,068] [main] Scan time: 0.621 s (29 ms/file) [testng] [2024-09-28 03:35:00,068] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-28 03:35:02,005] [pool-1-thread-1] Initializing /data/samples/joanna_viera01.png: [testng] 03:35:02,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:35:02,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-28_03-35-02.log] [testng] 03:35:02,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18608f22 - End of configuration. [testng] [2024-09-28 03:35:02,079] [pool-1-thread-12] Initializing /data/samples/william_wong02.png: [testng] 03:35:02,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:35:02,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-28_03-35-02.log] [testng] 03:35:02,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@141d8995 - End of configuration. [testng] [2024-09-28 03:35:02,097] [pool-1-thread-11] Initializing /data/qa-7473/n.tif: [testng] 03:35:02,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:35:02,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-28_03-35-02.log] [testng] 03:35:02,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c9dc661 - End of configuration. [testng] [2024-09-28 03:35:02,635] [pool-1-thread-10] Initializing /data/samples/StarV838.png: [testng] 03:35:02,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:35:02,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-28_03-35-02.log] [testng] 03:35:02,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@417bbda - End of configuration. [testng] [2024-09-28 03:35:02,658] [pool-1-thread-9] Initializing /data/samples/PhugAnimation3.png: [testng] 03:35:02,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:35:02,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-28_03-35-02.log] [testng] 03:35:02,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c8f3373 - End of configuration. [testng] [2024-09-28 03:35:02,683] [pool-1-thread-8] Initializing /data/samples/chompy2.png: [testng] 03:35:02,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:35:02,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-28_03-35-02.log] [testng] 03:35:02,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15d5895d - End of configuration. [testng] [2024-09-28 03:35:02,709] [pool-1-thread-7] Initializing /data/samples/Matrix.png: [testng] 03:35:02,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:35:02,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-28_03-35-02.log] [testng] 03:35:02,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78e081fb - End of configuration. [testng] [2024-09-28 03:35:02,736] [pool-1-thread-6] Initializing /data/samples/william_wong01.png: [testng] 03:35:02,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:35:02,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-28_03-35-02.log] [testng] 03:35:02,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@166c846c - End of configuration. [testng] [2024-09-28 03:35:02,765] [pool-1-thread-5] Initializing /data/samples/phug_logo.png: [testng] 03:35:02,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:35:02,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-28_03-35-02.log] [testng] 03:35:02,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e8f3ffa - End of configuration. [testng] [2024-09-28 03:35:02,785] [pool-1-thread-4] Initializing /data/qa-7473/x.png: [testng] 03:35:02,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:35:02,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-28_03-35-02.log] [testng] 03:35:02,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35cb69ef - End of configuration. [testng] [2024-09-28 03:35:02,809] [pool-1-thread-3] Initializing /data/colin/test.sfstdge.png: [testng] 03:35:02,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:35:02,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-28_03-35-02.log] [testng] 03:35:02,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ba4c793 - End of configuration. [testng] [2024-09-28 03:35:02,831] [pool-1-thread-2] Initializing /data/samples/Sun.png: [testng] 03:35:02,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:35:02,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:02,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-28_03-35-02.log] [testng] 03:35:02,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@551a2ce9 - End of configuration. [testng] [2024-09-28 03:35:04,377] [pool-1-thread-1] Initializing /data/samples/william_wong05.png: [testng] [2024-09-28 03:35:04,408] [pool-1-thread-4] Initializing /data/samples/orbit.png: [testng] [2024-09-28 03:35:04,427] [pool-1-thread-3] Initializing /data/samples/spinfox.png: [testng] [2024-09-28 03:35:04,780] [pool-1-thread-8] Initializing /data/samples/monkey_apng.png: [testng] [2024-09-28 03:35:04,802] [pool-1-thread-7] Initializing /data/samples/MoonPhases.png: [testng] [2024-09-28 03:35:04,822] [pool-1-thread-2] Initializing /data/samples/william_wong04.png: [testng] [2024-09-28 03:35:04,840] [pool-1-thread-10] Initializing /data/samples/daniel_coltri_two.png: [testng] [2024-09-28 03:35:04,855] [pool-1-thread-9] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-09-28 03:35:04,873] [pool-1-thread-6] Initializing /data/samples/atom.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS