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Started by upstream project "BIOFORMATS-test-repo" build number 203 originally caused by: Started by upstream project "Trigger" build number 229 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins3331395880571688124.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32253_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 03:40:28,694 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:40:28,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 03:40:28,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:40:28,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:40:28,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:40:28,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:40:28,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:40:28,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:40:28,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:40:28,698 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:40:28,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:40:28,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:40:28,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:40:28,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:40:28,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:40:28,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:40:28,893 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:40:28,893 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:40:28,893 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:40:28,894 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:40:28,894 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 03:40:28,895 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 03:40:28,895 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-28 03:40:28,903] [main] java.version = 11.0.16 [testng] 03:40:28,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:40:28,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:40:28,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-28_03-40-28.log] [testng] 03:40:28,947 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-28 03:40:28,950] [main] testng.directory = /data [testng] [2024-09-28 03:40:28,950] [main] testng.configDirectory = /config [testng] [2024-09-28 03:40:28,959] [main] testng.multiplier = 1.0 [testng] [2024-09-28 03:40:28,960] [main] testng.in-memory = false [testng] [2024-09-28 03:40:28,960] [main] testng.allow-missing = false [testng] [2024-09-28 03:40:28,960] [main] user.language = en [testng] [2024-09-28 03:40:28,960] [main] user.country = ${user.country} [testng] [2024-09-28 03:40:28,960] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-28 03:41:22,127] [main] ---------------------------------------- [testng] [2024-09-28 03:41:22,127] [main] Total files: 15735 [testng] [2024-09-28 03:41:22,127] [main] Scan time: 53.166 s (3 ms/file) [testng] [2024-09-28 03:41:22,127] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-28 03:42:23,383] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] 03:42:23,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:42:23,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:23,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-28_03-42-23.log] [testng] 03:42:23,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4baf91d1 - End of configuration. [testng] [2024-09-28 03:42:23,535] [pool-1-thread-12] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] 03:42:23,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:42:23,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:23,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-28_03-42-23.log] [testng] 03:42:23,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6b155b - End of configuration. [testng] [2024-09-28 03:42:24,707] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] 03:42:24,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:42:24,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:24,708 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-28_03-42-24.log] [testng] 03:42:24,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11465e36 - End of configuration. [testng] [2024-09-28 03:42:24,887] [pool-1-thread-10] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 03:42:24,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:42:24,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:24,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-28_03-42-24.log] [testng] 03:42:24,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fdd534f - End of configuration. [testng] [2024-09-28 03:42:25,038] [pool-1-thread-9] Initializing /data/converted/sebastien/F1.tif: [testng] 03:42:25,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:42:25,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:25,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-28_03-42-25.log] [testng] 03:42:25,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51cffc54 - End of configuration. [testng] [2024-09-28 03:42:25,290] [pool-1-thread-8] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] 03:42:25,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:42:25,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:25,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-28_03-42-25.log] [testng] 03:42:25,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@764a0ce2 - End of configuration. [testng] [2024-09-28 03:42:25,627] [pool-1-thread-7] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] 03:42:25,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:42:25,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:25,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-28_03-42-25.log] [testng] 03:42:25,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6de8233d - End of configuration. [testng] [2024-09-28 03:42:27,203] [pool-1-thread-6] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] 03:42:27,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:42:27,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:27,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-28_03-42-27.log] [testng] 03:42:27,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b7a897 - End of configuration. [testng] [2024-09-28 03:42:27,424] [pool-1-thread-5] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] 03:42:27,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:42:27,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:27,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-28_03-42-27.log] [testng] 03:42:27,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35dd62b - End of configuration. [testng] [2024-09-28 03:42:28,263] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 03:42:28,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:42:28,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:28,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-28_03-42-28.log] [testng] 03:42:28,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14d1d5bf - End of configuration. [testng] [2024-09-28 03:42:28,909] [pool-1-thread-3] Initializing /data/converted/dietmar/137.tif: [testng] 03:42:28,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:42:28,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:28,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-28_03-42-28.log] [testng] 03:42:28,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fb8523a - End of configuration. [testng] [2024-09-28 03:42:29,352] [pool-1-thread-2] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] 03:42:29,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:42:29,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:29,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-28_03-42-29.log] [testng] 03:42:29,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dc10d29 - End of configuration. [testng] [2024-09-28 03:42:38,600] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-09-28 03:42:41,625] [pool-1-thread-10] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-09-28 03:42:42,317] [pool-1-thread-6] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-09-28 03:42:52,442] [pool-1-thread-6] Initializing /data/converted/converted/2chz.tif: [testng] [2024-09-28 03:42:53,113] [pool-1-thread-2] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-09-28 03:43:02,327] [pool-1-thread-2] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-09-28 03:43:08,037] [pool-1-thread-11] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-09-28 03:43:53,797] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-09-28 03:44:28,415] [pool-1-thread-6] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-09-28 03:44:40,715] [pool-1-thread-6] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2024-09-28 03:44:46,855] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-09-28 03:44:51,650] [pool-1-thread-9] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-09-28 03:45:07,423] [pool-1-thread-8] Initializing /data/scott/Slide133-11.tif: [testng] [2024-09-28 03:45:23,250] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-09-28 03:45:54,868] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-09-28 03:46:42,602] [pool-1-thread-9] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-09-28 03:46:59,668] [pool-1-thread-3] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-09-28 03:47:09,896] [pool-1-thread-1] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-09-28 03:47:23,233] [pool-1-thread-9] Initializing /data/scott/Slide133-01.tif: [testng] [2024-09-28 03:47:38,180] [pool-1-thread-1] Initializing /data/converted/sebastien/test.tif: [testng] [2024-09-28 03:47:54,166] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-09-28 03:50:24,218] [pool-1-thread-4] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-09-28 03:53:13,137] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-09-28 03:55:26,553] [pool-1-thread-8] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-09-28 03:55:55,199] [pool-1-thread-8] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-09-28 03:56:57,836] [pool-1-thread-8] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-09-28 03:57:25,939] [pool-1-thread-9] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-09-28 03:57:33,405] [pool-1-thread-5] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-09-28 03:57:39,804] [pool-1-thread-3] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-09-28 03:57:42,319] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-09-28 03:58:02,912] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-09-28 03:58:06,561] [pool-1-thread-1] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-09-28 03:58:07,857] [pool-1-thread-3] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-09-28 03:58:09,220] [pool-1-thread-2] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-09-28 03:58:26,804] [pool-1-thread-12] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-09-28 03:58:45,732] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-09-28 03:58:49,534] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-09-28 03:59:21,428] [pool-1-thread-8] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-09-28 03:59:31,295] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-09-28 03:59:53,475] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-09-28 04:00:02,836] [pool-1-thread-8] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-09-28 04:00:12,766] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-09-28 04:00:17,302] [pool-1-thread-10] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-09-28 04:01:08,260] [pool-1-thread-3] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-09-28 04:03:34,010] [pool-1-thread-8] Initializing /data/othmar/mozaic.tif: [testng] [2024-09-28 04:05:29,188] [pool-1-thread-5] Initializing /data/converted/michel/d.tif: [testng] [2024-09-28 04:06:03,503] [pool-1-thread-5] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-09-28 04:06:15,626] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-09-28 04:06:39,629] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-09-28 04:07:00,333] [pool-1-thread-8] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-09-28 04:07:01,687] [pool-1-thread-9] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-09-28 04:07:18,625] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-09-28 04:07:20,080] [pool-1-thread-9] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-09-28 04:07:24,825] [pool-1-thread-4] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-09-28 04:09:20,752] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-09-28 04:10:34,696] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-09-28 04:10:43,535] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-09-28 04:11:42,647] [pool-1-thread-1] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-09-28 04:12:04,840] [pool-1-thread-1] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-09-28 04:12:25,179] [pool-1-thread-7] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-09-28 04:12:28,644] [pool-1-thread-1] Initializing /data/converted/michel/a.tif: [testng] [2024-09-28 04:12:44,142] [pool-1-thread-1] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-09-28 04:13:22,707] [pool-1-thread-7] Initializing /data/converted/michel/c.tif: [testng] [2024-09-28 04:13:41,260] [pool-1-thread-8] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-09-28 04:13:46,772] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-09-28 04:14:08,071] [pool-1-thread-8] Initializing /data/scott/Slide133-04.tif: [testng] [2024-09-28 04:14:32,338] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-09-28 04:15:02,548] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-09-28 04:16:00,615] [pool-1-thread-5] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-09-28 04:16:09,547] [pool-1-thread-7] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-09-28 04:16:22,737] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-09-28 04:16:51,321] [pool-1-thread-7] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-09-28 04:16:58,366] [pool-1-thread-5] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-09-28 04:17:17,466] [pool-1-thread-5] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-09-28 04:17:18,882] [pool-1-thread-7] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-09-28 04:17:56,295] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-09-28 04:18:11,959] [pool-1-thread-5] Initializing /data/converted/nicolas/image.tif: [testng] [2024-09-28 04:18:31,176] [pool-1-thread-4] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-09-28 04:18:37,076] [pool-1-thread-5] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-09-28 04:18:51,671] [pool-1-thread-4] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-09-28 04:21:18,046] [pool-1-thread-8] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-09-28 04:21:27,257] [pool-1-thread-9] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-09-28 04:21:46,881] [pool-1-thread-8] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-09-28 04:21:50,708] [pool-1-thread-6] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-09-28 04:22:02,480] [pool-1-thread-9] Initializing /data/converted/converted/damian.tif: [testng] [2024-09-28 04:22:27,441] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-09-28 04:23:28,998] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-09-28 04:23:40,309] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-09-28 04:24:12,226] [pool-1-thread-7] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-09-28 04:24:19,215] [pool-1-thread-4] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-09-28 04:25:22,102] [pool-1-thread-8] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-09-28 04:25:55,055] [pool-1-thread-8] Initializing /data/converted/michel/e.tif: [testng] [2024-09-28 04:26:12,174] [pool-1-thread-12] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-09-28 04:26:32,482] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-09-28 04:26:37,335] [pool-1-thread-8] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-09-28 04:27:16,087] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-09-28 04:27:23,752] [pool-1-thread-2] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-09-28 04:27:40,777] [pool-1-thread-2] Initializing /data/scott/Slide133-08.tif: [testng] [2024-09-28 04:28:01,516] [pool-1-thread-2] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-09-28 04:28:21,628] [pool-1-thread-9] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-09-28 04:28:31,464] [pool-1-thread-9] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-09-28 04:28:34,903] [pool-1-thread-2] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-09-28 04:28:40,491] [pool-1-thread-1] Initializing /data/converted/michel/b.tif: [testng] [2024-09-28 04:29:09,823] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-09-28 04:29:45,253] [pool-1-thread-6] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-09-28 04:29:52,227] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-09-28 04:30:03,392] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-09-28 04:31:41,322] [pool-1-thread-9] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-09-28 04:31:53,966] [pool-1-thread-7] Initializing /data/converted/dietmar/138.tif: [testng] [2024-09-28 04:32:34,956] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-09-28 04:32:56,830] [pool-1-thread-12] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-09-28 04:34:29,595] [pool-1-thread-8] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-09-28 04:36:24,357] [pool-1-thread-8] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] 05:00:09,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:00:09,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:09,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-28_05-00-09.log] [testng] 05:00:09,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cc49a32 - End of configuration. [testng] 05:02:47,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:02:47,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:02:47,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-28_05-02-47.log] [testng] 05:02:47,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@603042a5 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 82 minutes 22 seconds Finished: SUCCESS