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Started by upstream project "BIOFORMATS-test-repo" build number 204 originally caused by: Started by upstream project "Trigger" build number 230 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15955076765760870405.sh + '[' specs = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32315_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:34:17,662 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:34:17,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:34:17,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:34:17,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:34:17,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:34:17,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:34:17,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:34:17,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:34:17,666 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:34:17,666 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:34:17,666 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:34:17,667 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:34:17,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:34:17,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:34:17,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:34:17,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:34:17,866 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:34:17,866 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:34:17,866 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:34:17,866 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:34:17,867 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:34:17,867 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:34:17,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-29 01:34:17,876] [main] java.version = 17.0.2 [testng] 01:34:17,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:34:17,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:34:17,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-29_01-34-17.log] [testng] 01:34:17,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-09-29 01:34:17,926] [main] testng.directory = /data [testng] [2024-09-29 01:34:17,927] [main] testng.configDirectory = /config [testng] [2024-09-29 01:34:17,936] [main] testng.multiplier = 1.0 [testng] [2024-09-29 01:34:17,937] [main] testng.in-memory = false [testng] [2024-09-29 01:34:17,937] [main] testng.allow-missing = false [testng] [2024-09-29 01:34:17,937] [main] user.language = en [testng] [2024-09-29 01:34:17,937] [main] user.country = ${user.country} [testng] [2024-09-29 01:34:17,937] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-29 01:36:44,307] [main] ---------------------------------------- [testng] [2024-09-29 01:36:44,307] [main] Total files: 226 [testng] [2024-09-29 01:36:44,307] [main] Scan time: 146.37 s (647 ms/file) [testng] [2024-09-29 01:36:44,307] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-29 01:38:37,776] [pool-1-thread-1] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:38:37,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:38:37,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:37,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-29_01-38-37.log] [testng] 01:38:37,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@753b20c8 - End of configuration. [testng] [2024-09-29 01:38:37,939] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.tif: [testng] 01:38:37,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:38:37,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:37,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-29_01-38-37.log] [testng] 01:38:37,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a86ef83 - End of configuration. [testng] [2024-09-29 01:38:38,084] [pool-1-thread-11] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 01:38:38,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:38:38,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:38,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-29_01-38-38.log] [testng] 01:38:38,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bd4e928 - End of configuration. [testng] [2024-09-29 01:38:38,128] [pool-1-thread-10] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:38:38,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:38:38,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:38,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-29_01-38-38.log] [testng] 01:38:38,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678c12e4 - End of configuration. [testng] [2024-09-29 01:38:38,161] [pool-1-thread-9] Initializing /data/iplab/Chromosomes.IPL: [testng] 01:38:38,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:38:38,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:38,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-29_01-38-38.log] [testng] 01:38:38,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19a19720 - End of configuration. [testng] [2024-09-29 01:38:38,190] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:38:38,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:38:38,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:38,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-29_01-38-38.log] [testng] 01:38:38,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bc9ab94 - End of configuration. [testng] [2024-09-29 01:38:38,377] [pool-1-thread-7] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 01:38:38,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:38:38,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:38,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-29_01-38-38.log] [testng] 01:38:38,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64482366 - End of configuration. [testng] [2024-09-29 01:38:38,409] [pool-1-thread-6] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 01:38:38,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:38:38,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:38,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-29_01-38-38.log] [testng] 01:38:38,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c425b87 - End of configuration. [testng] [2024-09-29 01:38:38,617] [pool-1-thread-5] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] 01:38:38,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:38:38,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:38,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-29_01-38-38.log] [testng] 01:38:38,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36adcaa0 - End of configuration. [testng] [2024-09-29 01:38:38,814] [pool-1-thread-4] Initializing /data/iplab/Blend_Final.IPL: [testng] 01:38:38,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:38:38,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:38,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-29_01-38-38.log] [testng] 01:38:38,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71b5cb66 - End of configuration. [testng] [2024-09-29 01:38:38,864] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 01:38:38,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:38:38,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:38,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-29_01-38-38.log] [testng] 01:38:38,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b2de5d9 - End of configuration. [testng] [2024-09-29 01:38:39,010] [pool-1-thread-2] Initializing /data/iplab/Actin.IPL: [testng] 01:38:39,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:38:39,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:39,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-29_01-38-39.log] [testng] 01:38:39,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56c73bfd - End of configuration. [testng] [2024-09-29 01:38:40,821] [pool-1-thread-9] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-09-29 01:38:40,862] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-09-29 01:38:41,097] [pool-1-thread-10] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-09-29 01:38:41,139] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-09-29 01:38:41,367] [pool-1-thread-11] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-09-29 01:38:41,594] [pool-1-thread-7] Initializing /data/iplab/16Bit XRay.IPL: [testng] [2024-09-29 01:38:41,974] [pool-1-thread-6] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-09-29 01:38:42,259] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2024-09-29 01:38:42,492] [pool-1-thread-5] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-09-29 01:38:42,527] [pool-1-thread-1] Initializing /data/iplab/3t3 Cell.IPL: [testng] [2024-09-29 01:38:42,579] [pool-1-thread-3] Initializing /data/iplab/Color Image.IPL: [testng] [2024-09-29 01:38:42,885] [pool-1-thread-7] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2024-09-29 01:38:43,101] [pool-1-thread-9] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-09-29 01:38:43,350] [pool-1-thread-10] Initializing /data/fluoview/Sample_XT.tif: [testng] [2024-09-29 01:38:43,700] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-09-29 01:38:43,779] [pool-1-thread-3] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 33 seconds Finished: SUCCESS