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Started by upstream project "BIOFORMATS-test-repo" build number 204 originally caused by: Started by upstream project "Trigger" build number 230 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins1096306184049231087.sh + '[' fluoview = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32387_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:05:40,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:05:40,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 03:05:40,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:05:40,308 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:05:40,309 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:05:40,309 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:05:40,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:05:40,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:05:40,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:05:40,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:05:40,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:05:40,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:05:40,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:05:40,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:05:40,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:05:40,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:05:40,501 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:05:40,501 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:05:40,501 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:05:40,502 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:05:40,502 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 03:05:40,503 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 03:05:40,503 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-29 03:05:40,511] [main] java.version = 17.0.2 [testng] 03:05:40,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:05:40,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:05:40,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-29_03-05-40.log] [testng] 03:05:40,557 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-09-29 03:05:40,559] [main] testng.directory = /data [testng] [2024-09-29 03:05:40,560] [main] testng.configDirectory = /config [testng] [2024-09-29 03:05:40,568] [main] testng.multiplier = 1.0 [testng] [2024-09-29 03:05:40,569] [main] testng.in-memory = false [testng] [2024-09-29 03:05:40,569] [main] testng.allow-missing = false [testng] [2024-09-29 03:05:40,569] [main] user.language = en [testng] [2024-09-29 03:05:40,570] [main] user.country = ${user.country} [testng] [2024-09-29 03:05:40,570] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-29 03:05:43,028] [main] ---------------------------------------- [testng] [2024-09-29 03:05:43,028] [main] Total files: 14 [testng] [2024-09-29 03:05:43,028] [main] Scan time: 2.458 s (175 ms/file) [testng] [2024-09-29 03:05:43,028] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-29 03:05:58,928] [pool-1-thread-1] Initializing /data/timg/E1-v2(11 som).tif: [testng] 03:05:58,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:05:58,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:05:58,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-29_03-05-58.log] [testng] 03:05:58,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5db3a8c0 - End of configuration. [testng] [2024-09-29 03:05:59,969] [pool-1-thread-12] Initializing /data/timg/LiveOne.tif: [testng] 03:05:59,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:05:59,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:05:59,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-29_03-05-59.log] [testng] 03:05:59,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62ef520 - End of configuration. [testng] [2024-09-29 03:06:00,802] [pool-1-thread-11] Initializing /data/timg/LiveTwo.tif: [testng] 03:06:00,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:06:00,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:06:00,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-29_03-06-00.log] [testng] 03:06:00,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ccaae94 - End of configuration. [testng] [2024-09-29 03:06:01,770] [pool-1-thread-10] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF: [testng] 03:06:01,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:06:01,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:06:01,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-29_03-06-01.log] [testng] 03:06:01,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@500947e1 - End of configuration. [testng] [2024-09-29 03:06:03,132] [pool-1-thread-9] Initializing /data/aaron/olympus_fv500.tif: [testng] 03:06:03,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:06:03,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:06:03,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-29_03-06-03.log] [testng] 03:06:03,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62d9347f - End of configuration. [testng] [2024-09-29 03:06:04,138] [pool-1-thread-8] Initializing /data/timg/eric-three.tif: [testng] 03:06:04,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:06:04,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:06:04,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-29_03-06-04.log] [testng] 03:06:04,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73eeeee3 - End of configuration. [testng] [2024-09-29 03:06:04,975] [pool-1-thread-7] Initializing /data/shalin/40xNA0.6-512x512.tif: [testng] 03:06:04,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:06:04,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:06:04,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-29_03-06-04.log] [testng] 03:06:04,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@137e67f8 - End of configuration. [testng] [2024-09-29 03:06:05,876] [pool-1-thread-6] Initializing /data/brian/DBTRG 2X 1a-1.tif: [testng] 03:06:05,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:06:05,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:06:05,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-29_03-06-05.log] [testng] 03:06:05,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16bda97e - End of configuration. [testng] [2024-09-29 03:06:06,757] [pool-1-thread-5] Initializing /data/timg/eric-three-projection.tif: [testng] 03:06:06,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:06:06,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:06:06,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-29_03-06-06.log] [testng] 03:06:06,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e936439 - End of configuration. [testng] [2024-09-29 03:06:07,572] [pool-1-thread-4] Initializing /data/timg/eric-one.tif: [testng] 03:06:07,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:06:07,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:06:07,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-29_03-06-07.log] [testng] 03:06:07,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bc96c7d - End of configuration. [testng] [2024-09-29 03:06:08,490] [pool-1-thread-3] Initializing /data/timg/eric-one-3d.tif: [testng] 03:06:08,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:06:08,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:06:08,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-29_03-06-08.log] [testng] 03:06:08,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ce66f7d - End of configuration. [testng] [2024-09-29 03:06:09,404] [pool-1-thread-2] Initializing /data/timg/LiveThree-xyzt.tif: [testng] 03:06:09,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:06:09,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:06:09,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-29_03-06-09.log] [testng] 03:06:09,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ecf0dc - End of configuration. [testng] [2024-09-29 03:06:16,149] [pool-1-thread-12] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 45 seconds Finished: SUCCESS