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Started by upstream project "BIOFORMATS-test-repo" build number 204 originally caused by: Started by upstream project "Trigger" build number 230 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9347249088032035863.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32417_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:38:34,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:38:34,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 03:38:34,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:38:34,844 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:38:34,844 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:38:34,845 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:38:34,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:38:34,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:38:34,846 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:38:34,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:38:34,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:38:34,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:38:35,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:38:35,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:38:35,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:38:35,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:38:35,041 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:38:35,041 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:38:35,041 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:38:35,041 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:38:35,041 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 03:38:35,042 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 03:38:35,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-29 03:38:35,051] [main] java.version = 17.0.2 [testng] 03:38:35,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:38:35,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:38:35,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-29_03-38-35.log] [testng] 03:38:35,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-09-29 03:38:35,097] [main] testng.directory = /data [testng] [2024-09-29 03:38:35,098] [main] testng.configDirectory = /config [testng] [2024-09-29 03:38:35,106] [main] testng.multiplier = 1.0 [testng] [2024-09-29 03:38:35,107] [main] testng.in-memory = false [testng] [2024-09-29 03:38:35,107] [main] testng.allow-missing = false [testng] [2024-09-29 03:38:35,107] [main] user.language = en [testng] [2024-09-29 03:38:35,107] [main] user.country = ${user.country} [testng] [2024-09-29 03:38:35,108] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-29 03:40:03,712] [main] ---------------------------------------- [testng] [2024-09-29 03:40:03,713] [main] Total files: 15735 [testng] [2024-09-29 03:40:03,713] [main] Scan time: 88.604 s (5 ms/file) [testng] [2024-09-29 03:40:03,713] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-29 03:41:28,133] [pool-1-thread-1] Initializing /data/converted/vladan/vladan.tif: [testng] 03:41:28,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:41:28,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:28,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-29_03-41-28.log] [testng] 03:41:28,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d69b339 - End of configuration. [testng] [2024-09-29 03:41:28,455] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] 03:41:28,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:41:28,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:28,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-29_03-41-28.log] [testng] 03:41:28,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d7d31f9 - End of configuration. [testng] [2024-09-29 03:41:29,160] [pool-1-thread-11] Initializing /data/converted/converted/mri-stack.tif: [testng] 03:41:29,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:41:29,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:29,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-29_03-41-29.log] [testng] 03:41:29,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45cbfe2f - End of configuration. [testng] [2024-09-29 03:41:29,423] [pool-1-thread-10] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] 03:41:29,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:41:29,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:29,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-29_03-41-29.log] [testng] 03:41:29,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c541f0e - End of configuration. [testng] [2024-09-29 03:41:30,269] [pool-1-thread-9] Initializing /data/converted/karsten/Bild1.tif: [testng] 03:41:30,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:41:30,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:30,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-29_03-41-30.log] [testng] 03:41:30,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b6fbe72 - End of configuration. [testng] [2024-09-29 03:41:30,547] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] 03:41:30,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:41:30,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:30,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-29_03-41-30.log] [testng] 03:41:30,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2499dda5 - End of configuration. [testng] [2024-09-29 03:41:30,937] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] 03:41:30,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:41:30,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:30,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-29_03-41-30.log] [testng] 03:41:30,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31afbe7a - End of configuration. [testng] [2024-09-29 03:41:31,377] [pool-1-thread-6] Initializing /data/converted/stephan/notok1.tif: [testng] 03:41:31,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:41:31,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:31,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-29_03-41-31.log] [testng] 03:41:31,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@180dc5b - End of configuration. [testng] [2024-09-29 03:41:31,643] [pool-1-thread-5] Initializing /data/converted/eirinn/demo-tile.tif: [testng] 03:41:31,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:41:31,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:31,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-29_03-41-31.log] [testng] 03:41:31,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@297eb9c7 - End of configuration. [testng] [2024-09-29 03:41:31,907] [pool-1-thread-4] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] 03:41:31,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:41:31,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:31,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-29_03-41-31.log] [testng] 03:41:31,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c3fa18 - End of configuration. [testng] [2024-09-29 03:41:32,147] [pool-1-thread-3] Initializing /data/converted/michel/d.tif: [testng] 03:41:32,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:41:32,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:32,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-29_03-41-32.log] [testng] 03:41:32,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b1697e - End of configuration. [testng] [2024-09-29 03:41:32,384] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 03:41:32,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:41:32,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:32,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-29_03-41-32.log] [testng] 03:41:32,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16463d5c - End of configuration. [testng] [2024-09-29 03:41:42,731] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-09-29 03:41:43,733] [pool-1-thread-4] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-09-29 03:41:47,582] [pool-1-thread-3] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-09-29 03:41:48,512] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-09-29 03:41:50,643] [pool-1-thread-5] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-09-29 03:42:05,143] [pool-1-thread-3] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-09-29 03:42:20,631] [pool-1-thread-3] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-09-29 03:42:24,209] [pool-1-thread-6] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-09-29 03:42:34,476] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-09-29 03:42:35,627] [pool-1-thread-4] Initializing /data/converted/michel/c.tif: [testng] [2024-09-29 03:42:54,157] [pool-1-thread-4] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-09-29 03:43:07,944] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-09-29 03:43:10,194] [pool-1-thread-4] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-09-29 03:44:14,255] [pool-1-thread-1] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-09-29 03:44:16,420] [pool-1-thread-3] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-09-29 03:44:33,253] [pool-1-thread-3] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-09-29 03:44:45,360] [pool-1-thread-3] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-09-29 03:44:49,974] [pool-1-thread-11] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-09-29 03:44:50,717] [pool-1-thread-2] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-09-29 03:44:55,980] [pool-1-thread-7] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-09-29 03:45:02,111] [pool-1-thread-3] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-09-29 03:45:07,343] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-09-29 03:45:08,526] [pool-1-thread-11] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-09-29 03:45:09,509] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-09-29 03:45:15,033] [pool-1-thread-12] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-09-29 03:45:35,083] [pool-1-thread-7] Initializing /data/converted/converted/damian.tif: [testng] [2024-09-29 03:45:45,789] [pool-1-thread-12] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-09-29 03:45:57,884] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-09-29 03:45:59,265] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] [2024-09-29 03:46:27,573] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-09-29 03:47:14,859] [pool-1-thread-8] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-09-29 03:47:37,536] [pool-1-thread-8] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-09-29 03:48:23,067] [pool-1-thread-8] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-09-29 03:48:30,084] [pool-1-thread-11] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-09-29 03:48:43,586] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-09-29 03:48:46,797] [pool-1-thread-8] Initializing /data/converted/converted/2chz.tif: [testng] [2024-09-29 03:48:52,715] [pool-1-thread-1] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-09-29 03:49:21,768] [pool-1-thread-4] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-09-29 03:49:47,116] [pool-1-thread-4] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-09-29 03:51:40,080] [pool-1-thread-9] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-09-29 03:51:41,881] [pool-1-thread-8] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-09-29 03:52:44,000] [pool-1-thread-2] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-09-29 03:53:11,395] [pool-1-thread-5] Initializing /data/converted/nicolas/image.tif: [testng] [2024-09-29 03:53:24,540] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-09-29 03:53:28,876] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-09-29 03:53:36,638] [pool-1-thread-5] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-09-29 03:53:40,589] [pool-1-thread-8] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-09-29 03:53:45,255] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-09-29 03:53:52,832] [pool-1-thread-7] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-09-29 03:54:58,065] [pool-1-thread-8] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-09-29 03:55:58,008] [pool-1-thread-2] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-09-29 03:56:21,922] [pool-1-thread-3] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-09-29 03:56:23,260] [pool-1-thread-2] Initializing /data/converted/dietmar/138.tif: [testng] [2024-09-29 03:57:48,660] [pool-1-thread-3] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-09-29 03:58:05,138] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-09-29 03:59:44,418] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-09-29 04:00:09,553] [pool-1-thread-9] Initializing /data/converted/michel/a.tif: [testng] [2024-09-29 04:00:12,565] [pool-1-thread-10] Initializing /data/scott/Slide133-04.tif: [testng] [2024-09-29 04:00:25,661] [pool-1-thread-9] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-09-29 04:00:32,499] [pool-1-thread-10] Initializing /data/scott/Slide133-11.tif: [testng] [2024-09-29 04:00:51,256] [pool-1-thread-10] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-09-29 04:01:05,701] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-09-29 04:02:01,941] [pool-1-thread-2] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2024-09-29 04:02:10,402] [pool-1-thread-5] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-09-29 04:02:26,348] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-09-29 04:02:30,904] [pool-1-thread-5] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-09-29 04:02:52,592] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-09-29 04:02:59,138] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-09-29 04:03:05,092] [pool-1-thread-8] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-09-29 04:03:22,297] [pool-1-thread-3] Initializing /data/converted/michel/e.tif: [testng] [2024-09-29 04:03:49,721] [pool-1-thread-8] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-09-29 04:03:55,436] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-09-29 04:04:10,877] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-09-29 04:04:46,895] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-09-29 04:07:08,086] [pool-1-thread-10] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-09-29 04:08:03,307] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-09-29 04:10:04,558] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-09-29 04:10:54,100] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-09-29 04:11:36,101] [pool-1-thread-3] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-09-29 04:11:45,954] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-09-29 04:11:50,453] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-09-29 04:13:39,871] [pool-1-thread-7] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-09-29 04:15:11,296] [pool-1-thread-10] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-09-29 04:15:52,333] [pool-1-thread-10] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-09-29 04:17:12,877] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-09-29 04:17:14,940] [pool-1-thread-12] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-09-29 04:17:39,600] [pool-1-thread-12] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-09-29 04:18:26,327] [pool-1-thread-4] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-09-29 04:18:29,440] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-09-29 04:18:41,558] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-09-29 04:18:50,509] [pool-1-thread-3] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-09-29 04:19:04,914] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-09-29 04:19:12,044] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-09-29 04:19:26,854] [pool-1-thread-12] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-09-29 04:20:02,161] [pool-1-thread-9] Initializing /data/converted/michel/b.tif: [testng] [2024-09-29 04:20:30,564] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-09-29 04:20:48,720] [pool-1-thread-9] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-09-29 04:21:14,734] [pool-1-thread-8] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-09-29 04:21:34,301] [pool-1-thread-8] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-09-29 04:23:43,187] [pool-1-thread-9] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-09-29 04:23:45,414] [pool-1-thread-5] Initializing /data/scott/Slide133-08.tif: [testng] [2024-09-29 04:23:50,645] [pool-1-thread-10] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-09-29 04:23:58,096] [pool-1-thread-9] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-09-29 04:24:04,049] [pool-1-thread-8] Initializing /data/converted/dietmar/137.tif: [testng] [2024-09-29 04:24:05,366] [pool-1-thread-5] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-09-29 04:24:11,460] [pool-1-thread-5] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-09-29 04:24:19,499] [pool-1-thread-2] Initializing /data/scott/Slide133-01.tif: [testng] [2024-09-29 04:24:20,648] [pool-1-thread-10] Initializing /data/converted/sebastien/test.tif: [testng] [2024-09-29 04:24:24,684] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-09-29 04:24:45,596] [pool-1-thread-2] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-09-29 04:24:51,361] [pool-1-thread-7] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-09-29 04:25:06,971] [pool-1-thread-7] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-09-29 04:25:21,667] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] 05:01:43,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:01:43,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:43,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-29_05-01-43.log] [testng] 05:01:43,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12aa9370 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 83 minutes 14 seconds Finished: SUCCESS