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Started by upstream project "BIOFORMATS-test-repo" build number 204 originally caused by: Started by upstream project "Trigger" build number 230 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins15232917971690147629.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32446_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:38:18,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:38:18,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 04:38:18,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:38:18,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:38:18,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:38:18,760 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:38:18,760 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:38:18,760 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:38:18,760 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:38:18,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:38:18,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:38:18,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:38:18,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:38:18,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:38:18,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:38:18,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:38:18,949 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:38:18,949 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:38:18,949 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:38:18,950 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:38:18,950 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 04:38:18,950 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 04:38:18,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-29 04:38:18,959] [main] java.version = 17.0.2 [testng] 04:38:18,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:38:18,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:19,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-29_04-38-18.log] [testng] 04:38:19,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-09-29 04:38:19,005] [main] testng.directory = /data [testng] [2024-09-29 04:38:19,005] [main] testng.configDirectory = /config [testng] [2024-09-29 04:38:19,014] [main] testng.multiplier = 1.0 [testng] [2024-09-29 04:38:19,015] [main] testng.in-memory = false [testng] [2024-09-29 04:38:19,015] [main] testng.allow-missing = false [testng] [2024-09-29 04:38:19,015] [main] user.language = en [testng] [2024-09-29 04:38:19,015] [main] user.country = ${user.country} [testng] [2024-09-29 04:38:19,015] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-29 04:38:24,203] [main] ---------------------------------------- [testng] [2024-09-29 04:38:24,203] [main] Total files: 22 [testng] [2024-09-29 04:38:24,203] [main] Scan time: 5.188 s (235 ms/file) [testng] [2024-09-29 04:38:24,203] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-29 04:38:41,237] [pool-1-thread-1] Initializing /data/converted/clown.tif: [testng] 04:38:41,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:38:41,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:41,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-29_04-38-41.log] [testng] 04:38:41,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2585ce56 - End of configuration. [testng] [2024-09-29 04:38:41,750] [pool-1-thread-12] Initializing /data/samples/PROBE.TIF: [testng] 04:38:41,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:38:41,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:41,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-29_04-38-41.log] [testng] 04:38:41,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5550d6 - End of configuration. [testng] [2024-09-29 04:38:42,213] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 04:38:42,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:38:42,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:42,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-29_04-38-42.log] [testng] 04:38:42,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b6d87e0 - End of configuration. [testng] [2024-09-29 04:38:43,370] [pool-1-thread-10] Initializing /data/converted/dub01.ipw: [testng] 04:38:43,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:38:43,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:43,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-29_04-38-43.log] [testng] 04:38:43,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f8f5386 - End of configuration. [testng] [2024-09-29 04:38:43,801] [pool-1-thread-9] Initializing /data/converted/mitosis-test.tif: [testng] 04:38:43,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:38:43,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:43,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-29_04-38-43.log] [testng] 04:38:43,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fc3c33e - End of configuration. [testng] [2024-09-29 04:38:44,983] [pool-1-thread-8] Initializing /data/converted/dub01.pic: [testng] 04:38:44,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:38:44,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:44,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-29_04-38-44.log] [testng] 04:38:44,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f7ac6fa - End of configuration. [testng] [2024-09-29 04:38:45,440] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 04:38:45,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:38:45,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:45,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-29_04-38-45.log] [testng] 04:38:45,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a25cb77 - End of configuration. [testng] [2024-09-29 04:38:45,902] [pool-1-thread-6] Initializing /data/converted/dub01.seq: [testng] 04:38:45,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:38:45,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:45,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-29_04-38-45.log] [testng] 04:38:45,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e9f6443 - End of configuration. [testng] [2024-09-29 04:38:46,373] [pool-1-thread-5] Initializing /data/converted/clown.ipw: [testng] 04:38:46,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:38:46,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:46,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-29_04-38-46.log] [testng] 04:38:46,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2070a583 - End of configuration. [testng] [2024-09-29 04:38:46,781] [pool-1-thread-4] Initializing /data/converted/mitosis-test.ipw: [testng] 04:38:46,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:38:46,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:46,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-29_04-38-46.log] [testng] 04:38:46,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@131149b8 - End of configuration. [testng] [2024-09-29 04:38:47,196] [pool-1-thread-3] Initializing /data/alex/AFAset0003.ips: [testng] 04:38:47,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:38:47,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:47,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-29_04-38-47.log] [testng] 04:38:47,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d488fa2 - End of configuration. [testng] [2024-09-29 04:38:47,663] [pool-1-thread-2] Initializing /data/samples/FLDUAL.TIF: [testng] 04:38:47,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:38:47,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:47,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-29_04-38-47.log] [testng] 04:38:47,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@128c61bc - End of configuration. [testng] [2024-09-29 04:38:54,378] [pool-1-thread-7] Initializing /data/converted/mitosis-test.seq: [testng] [2024-09-29 04:38:54,899] [pool-1-thread-8] Initializing /data/xiuwen/head2.seq: [testng] [2024-09-29 04:38:55,492] [pool-1-thread-12] Initializing /data/converted/clown8c.ipw: [testng] [2024-09-29 04:38:55,990] [pool-1-thread-6] Initializing /data/samples/TISSUE.TIF: [testng] [2024-09-29 04:38:57,070] [pool-1-thread-1] Initializing /data/samples/HEART.SEQ: [testng] [2024-09-29 04:38:57,504] [pool-1-thread-5] Initializing /data/converted/clown8c.tif: [testng] [2024-09-29 04:38:58,470] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2024-09-29 04:38:58,924] [pool-1-thread-4] Initializing /data/converted/clown.seq: [testng] [2024-09-29 04:38:59,427] [pool-1-thread-11] Initializing /data/converted/clown8c.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 49 seconds Finished: SUCCESS