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Started by upstream project "BIOFORMATS-test-repo" build number 205 originally caused by: Started by upstream project "Trigger" build number 231 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17836203240140187517.sh + '[' psd = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_32585_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:49:51,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:49:51,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:49:51,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:49:51,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:49:51,322 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:49:51,322 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:49:51,322 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:49:51,323 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:49:51,323 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 03:49:51,323 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 03:49:51,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 423 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-30 03:49:51,333] [main] java.version = 1.8.0_342 [testng] 03:49:51,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:49:51,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:49:51,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-30_03-49-51.log] [testng] 03:49:51,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-30 03:49:51,441] [main] testng.directory = /data [testng] [2024-09-30 03:49:51,441] [main] testng.configDirectory = /config [testng] [2024-09-30 03:49:51,497] [main] testng.multiplier = 1.0 [testng] [2024-09-30 03:49:51,497] [main] testng.in-memory = false [testng] [2024-09-30 03:49:51,497] [main] testng.allow-missing = false [testng] [2024-09-30 03:49:51,497] [main] user.language = fr [testng] [2024-09-30 03:49:51,497] [main] user.country = FR [testng] [2024-09-30 03:49:51,497] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-30 03:49:53,164] [main] ---------------------------------------- [testng] [2024-09-30 03:49:53,164] [main] Total files: 18 [testng] [2024-09-30 03:49:53,164] [main] Scan time: 1.667 s (92 ms/file) [testng] [2024-09-30 03:49:53,164] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-30 03:50:01,688] [pool-1-thread-1] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 03:50:01,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:50:01,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:01,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-30_03-50-01.log] [testng] 03:50:01,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@165f0b56 - End of configuration. [testng] [2024-09-30 03:50:02,038] [pool-1-thread-12] Initializing /data/ascb/607x.psd: [testng] 03:50:02,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:50:02,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:02,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-30_03-50-02.log] [testng] 03:50:02,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e81a693 - End of configuration. [testng] [2024-09-30 03:50:02,372] [pool-1-thread-11] Initializing /data/misc/glossy_orbs.psd: [testng] 03:50:02,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:50:02,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:02,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-30_03-50-02.log] [testng] 03:50:02,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59ae402b - End of configuration. [testng] [2024-09-30 03:50:02,759] [pool-1-thread-10] Initializing /data/misc/glossy_buttons.psd: [testng] 03:50:02,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:50:02,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:02,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-30_03-50-02.log] [testng] 03:50:02,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48338d27 - End of configuration. [testng] [2024-09-30 03:50:03,151] [pool-1-thread-9] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 03:50:03,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:50:03,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:03,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-30_03-50-03.log] [testng] 03:50:03,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@334027df - End of configuration. [testng] [2024-09-30 03:50:03,491] [pool-1-thread-8] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 03:50:03,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:50:03,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:03,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-30_03-50-03.log] [testng] 03:50:03,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ca35b8 - End of configuration. [testng] [2024-09-30 03:50:03,849] [pool-1-thread-7] Initializing /data/misc/smilie.psd: [testng] 03:50:03,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:50:03,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:03,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-30_03-50-03.log] [testng] 03:50:03,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d211acb - End of configuration. [testng] [2024-09-30 03:50:04,145] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd: [testng] 03:50:04,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:50:04,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:04,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-30_03-50-04.log] [testng] 03:50:04,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@790f62d5 - End of configuration. [testng] [2024-09-30 03:50:04,447] [pool-1-thread-5] Initializing /data/misc/venus_composite_8bit.psd: [testng] 03:50:04,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:50:04,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:04,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-30_03-50-04.log] [testng] 03:50:04,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37fb666b - End of configuration. [testng] [2024-09-30 03:50:04,794] [pool-1-thread-4] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 03:50:04,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:50:04,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:04,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-30_03-50-04.log] [testng] 03:50:04,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4067d2f5 - End of configuration. [testng] [2024-09-30 03:50:05,133] [pool-1-thread-3] Initializing /data/big-images/8kx8k.psd: [testng] 03:50:05,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:50:05,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:05,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-30_03-50-05.log] [testng] 03:50:05,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@502ff3fc - End of configuration. [testng] [2024-09-30 03:50:05,457] [pool-1-thread-2] Initializing /data/cris/house.tif: [testng] 03:50:05,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:50:05,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:05,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-30_03-50-05.log] [testng] 03:50:05,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21f6aaa1 - End of configuration. [testng] [2024-09-30 03:50:12,058] [pool-1-thread-11] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-09-30 03:50:12,473] [pool-1-thread-10] Initializing /data/misc/vig_drawing_1.psd: [testng] [2024-09-30 03:50:12,838] [pool-1-thread-6] Initializing /data/ascb/423.psd: [testng] [2024-09-30 03:50:13,195] [pool-1-thread-7] Initializing /data/misc/venus_composite.psd: [testng] [2024-09-30 03:50:13,559] [pool-1-thread-5] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] [2024-09-30 03:50:13,911] [pool-1-thread-8] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 44 seconds Finished: SUCCESS