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Started by upstream project "BIOFORMATS-test-repo" build number 205 originally caused by: Started by upstream project "Trigger" build number 231 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins3078933211123013214.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_32610_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:29:32,211 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:29:32,213 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 04:29:32,213 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:29:32,214 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:29:32,214 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:29:32,214 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:29:32,214 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:29:32,214 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:29:32,215 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:29:32,215 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:29:32,215 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:29:32,215 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:29:32,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:29:32,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:29:32,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:29:32,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:29:32,463 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:29:32,463 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:29:32,463 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:29:32,464 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:29:32,464 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 04:29:32,465 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 04:29:32,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 250 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-30 04:29:32,474] [main] java.version = 1.8.0_342 [testng] 04:29:32,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:29:32,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:32,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-30_04-29-32.log] [testng] 04:29:32,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-30 04:29:32,524] [main] testng.directory = /data [testng] [2024-09-30 04:29:32,524] [main] testng.configDirectory = /config [testng] [2024-09-30 04:29:32,535] [main] testng.multiplier = 1.0 [testng] [2024-09-30 04:29:32,536] [main] testng.in-memory = false [testng] [2024-09-30 04:29:32,536] [main] testng.allow-missing = false [testng] [2024-09-30 04:29:32,536] [main] user.language = fr [testng] [2024-09-30 04:29:32,536] [main] user.country = FR [testng] [2024-09-30 04:29:32,536] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-30 04:29:36,480] [main] ---------------------------------------- [testng] [2024-09-30 04:29:36,480] [main] Total files: 22 [testng] [2024-09-30 04:29:36,480] [main] Scan time: 3.944 s (179 ms/file) [testng] [2024-09-30 04:29:36,480] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-30 04:29:49,545] [pool-1-thread-1] Initializing /data/converted/clown8c.tif: [testng] 04:29:49,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:29:49,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:49,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-30_04-29-49.log] [testng] 04:29:49,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ed4a7b3 - End of configuration. [testng] [2024-09-30 04:29:50,210] [pool-1-thread-12] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 04:29:50,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:29:50,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:50,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-30_04-29-50.log] [testng] 04:29:50,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@473475b4 - End of configuration. [testng] [2024-09-30 04:29:50,889] [pool-1-thread-11] Initializing /data/samples/FLDUAL.TIF: [testng] 04:29:50,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:29:50,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:50,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-30_04-29-50.log] [testng] 04:29:50,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d2e8299 - End of configuration. [testng] [2024-09-30 04:29:51,539] [pool-1-thread-10] Initializing /data/alex/AFAset0003.ips: [testng] 04:29:51,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:29:51,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:51,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-30_04-29-51.log] [testng] 04:29:51,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d9b10d8 - End of configuration. [testng] [2024-09-30 04:29:51,825] [pool-1-thread-9] Initializing /data/converted/clown.tif: [testng] 04:29:51,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:29:51,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:51,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-30_04-29-51.log] [testng] 04:29:51,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ddd0107 - End of configuration. [testng] [2024-09-30 04:29:52,109] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 04:29:52,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:29:52,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:52,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-30_04-29-52.log] [testng] 04:29:52,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@464722fc - End of configuration. [testng] [2024-09-30 04:29:52,350] [pool-1-thread-7] Initializing /data/converted/clown.ipw: [testng] 04:29:52,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:29:52,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:52,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-30_04-29-52.log] [testng] 04:29:52,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4edc71a1 - End of configuration. [testng] [2024-09-30 04:29:52,603] [pool-1-thread-6] Initializing /data/samples/TISSUE.TIF: [testng] 04:29:52,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:29:52,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:52,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-30_04-29-52.log] [testng] 04:29:52,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47561006 - End of configuration. [testng] [2024-09-30 04:29:53,213] [pool-1-thread-5] Initializing /data/converted/dub01.pic: [testng] 04:29:53,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:29:53,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:53,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-30_04-29-53.log] [testng] 04:29:53,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cf23374 - End of configuration. [testng] [2024-09-30 04:29:53,491] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 04:29:53,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:29:53,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:53,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-30_04-29-53.log] [testng] 04:29:53,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6104e72b - End of configuration. [testng] [2024-09-30 04:29:53,770] [pool-1-thread-3] Initializing /data/converted/clown8c.seq: [testng] 04:29:53,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:29:53,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:53,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-30_04-29-53.log] [testng] 04:29:53,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b0242e3 - End of configuration. [testng] [2024-09-30 04:29:54,041] [pool-1-thread-2] Initializing /data/converted/mitosis-test.ipw: [testng] 04:29:54,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:29:54,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:54,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-30_04-29-54.log] [testng] 04:29:54,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55d2b576 - End of configuration. [testng] [2024-09-30 04:29:57,596] [pool-1-thread-3] Initializing /data/converted/dub01.seq: [testng] [2024-09-30 04:29:57,889] [pool-1-thread-9] Initializing /data/converted/clown8c.ipw: [testng] [2024-09-30 04:29:58,150] [pool-1-thread-7] Initializing /data/converted/clown.seq: [testng] [2024-09-30 04:29:58,454] [pool-1-thread-2] Initializing /data/samples/PROBE.TIF: [testng] [2024-09-30 04:29:58,723] [pool-1-thread-5] Initializing /data/converted/mitosis-test.seq: [testng] [2024-09-30 04:29:59,011] [pool-1-thread-8] Initializing /data/converted/dub01.ipw: [testng] [2024-09-30 04:29:59,272] [pool-1-thread-4] Initializing /data/xiuwen/head2.seq: [testng] [2024-09-30 04:30:00,345] [pool-1-thread-1] Initializing /data/samples/HEART.SEQ: [testng] [2024-09-30 04:30:00,647] [pool-1-thread-11] Initializing /data/converted/mitosis-test.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 3 seconds Finished: SUCCESS