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Started by upstream project "BIOFORMATS-test-repo" build number 206 originally caused by: Started by upstream project "Trigger" build number 232 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins17356547598076459677.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32658_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:36:59,327 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:36:59,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:36:59,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:59,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:59,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:36:59,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:36:59,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:36:59,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:59,332 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:59,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:36:59,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:36:59,333 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:36:59,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:36:59,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:36:59,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:36:59,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:36:59,557 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:36:59,558 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:36:59,558 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:36:59,558 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:36:59,558 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:36:59,560 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:36:59,560 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 228 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-01 01:36:59,570] [main] java.version = 11.0.16 [testng] 01:36:59,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:36:59,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:59,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-01_01-36-59.log] [testng] 01:36:59,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-10-01 01:36:59,620] [main] testng.directory = /data [testng] [2024-10-01 01:36:59,621] [main] testng.configDirectory = /config [testng] [2024-10-01 01:36:59,632] [main] testng.multiplier = 1.0 [testng] [2024-10-01 01:36:59,633] [main] testng.in-memory = false [testng] [2024-10-01 01:36:59,633] [main] testng.allow-missing = false [testng] [2024-10-01 01:36:59,633] [main] user.language = en [testng] [2024-10-01 01:36:59,633] [main] user.country = ${user.country} [testng] [2024-10-01 01:36:59,634] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-01 01:37:17,430] [main] ---------------------------------------- [testng] [2024-10-01 01:37:17,430] [main] Total files: 259 [testng] [2024-10-01 01:37:17,430] [main] Scan time: 17.796 s (68 ms/file) [testng] [2024-10-01 01:37:17,431] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-01 01:42:47,447] [pool-1-thread-1] Initializing /data/brian/FLIP.oib: [testng] 01:42:47,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:42:47,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:47,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-01_01-42-47.log] [testng] 01:42:47,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bb5f2ea - End of configuration. [testng] [2024-10-01 01:42:47,864] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] 01:42:47,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:42:47,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:47,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-01_01-42-47.log] [testng] 01:42:47,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52641b4 - End of configuration. [testng] [2024-10-01 01:42:48,375] [pool-1-thread-11] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] 01:42:48,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:42:48,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:48,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-01_01-42-48.log] [testng] 01:42:48,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ad45928 - End of configuration. [testng] [2024-10-01 01:42:48,512] [pool-1-thread-10] Initializing /data/michael/CELL3.oib: [testng] 01:42:48,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:42:48,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:48,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-01_01-42-48.log] [testng] 01:42:48,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c01225 - End of configuration. [testng] [2024-10-01 01:42:48,649] [pool-1-thread-9] Initializing /data/johannes/step5b.bmp: [testng] 01:42:48,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:42:48,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:48,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-01_01-42-48.log] [testng] 01:42:48,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eee426f - End of configuration. [testng] [2024-10-01 01:42:48,683] [pool-1-thread-8] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] 01:42:48,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:42:48,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:48,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-01_01-42-48.log] [testng] 01:42:48,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e2a1bd6 - End of configuration. [testng] [2024-10-01 01:42:49,144] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] 01:42:49,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:42:49,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:49,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-01_01-42-49.log] [testng] 01:42:49,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50170ffe - End of configuration. [testng] [2024-10-01 01:42:49,257] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] 01:42:49,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:42:49,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:49,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-01_01-42-49.log] [testng] 01:42:49,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a72f519 - End of configuration. [testng] [2024-10-01 01:42:49,697] [pool-1-thread-5] Initializing /data/molly/11OCT4.OIF: [testng] 01:42:49,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:42:49,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:49,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-01_01-42-49.log] [testng] 01:42:49,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eb75671 - End of configuration. [testng] [2024-10-01 01:42:51,085] [pool-1-thread-4] Initializing /data/simon/never_worked.oib: [testng] 01:42:51,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:42:51,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:51,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-01_01-42-51.log] [testng] 01:42:51,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798339e8 - End of configuration. [testng] [2024-10-01 01:42:51,271] [pool-1-thread-3] Initializing /data/glen/Image0002.oif: [testng] 01:42:51,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:42:51,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:51,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-01_01-42-51.log] [testng] 01:42:51,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ef2047b - End of configuration. [testng] [2024-10-01 01:42:51,807] [pool-1-thread-2] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] 01:42:51,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:42:51,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:51,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-01_01-42-51.log] [testng] 01:42:51,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41e5b930 - End of configuration. [testng] [2024-10-01 01:42:54,797] [pool-1-thread-9] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-10-01 01:42:54,950] [pool-1-thread-7] Initializing /data/molly/11OCT6.OIF: [testng] [2024-10-01 01:42:58,472] [pool-1-thread-10] Initializing /data/glen/singleseqframe.oif: [testng] [2024-10-01 01:42:58,774] [pool-1-thread-4] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-10-01 01:42:59,418] [pool-1-thread-11] Initializing /data/glen/seqlinestack.oib: [testng] [2024-10-01 01:42:59,847] [pool-1-thread-1] Initializing /data/glen/singleseqframe.oib: [testng] [2024-10-01 01:43:00,052] [pool-1-thread-12] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-10-01 01:43:00,347] [pool-1-thread-6] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-10-01 01:43:00,861] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-10-01 01:43:02,029] [pool-1-thread-9] Initializing /data/glen/111407.oif: [testng] [2024-10-01 01:43:03,244] [pool-1-thread-1] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-10-01 01:43:04,992] [pool-1-thread-12] Initializing /data/sten/01.oib: [testng] [2024-10-01 01:43:05,217] [pool-1-thread-4] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-10-01 01:43:05,750] [pool-1-thread-2] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-10-01 01:43:05,941] [pool-1-thread-6] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-10-01 01:43:06,168] [pool-1-thread-11] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-10-01 01:43:08,335] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-10-01 01:43:08,648] [pool-1-thread-6] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-10-01 01:43:09,031] [pool-1-thread-12] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-10-01 01:43:10,198] [pool-1-thread-1] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-10-01 01:43:11,558] [pool-1-thread-4] Initializing /data/molly/11OCT2.OIF: [testng] [2024-10-01 01:43:21,680] [pool-1-thread-2] Initializing /data/monica/Image0056.oif: [testng] [2024-10-01 01:43:22,304] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-10-01 01:43:22,558] [pool-1-thread-10] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-10-01 01:43:48,487] [pool-1-thread-6] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-10-01 01:43:51,529] [pool-1-thread-6] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-10-01 01:43:57,010] [pool-1-thread-2] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-10-01 01:43:59,208] [pool-1-thread-2] Initializing /data/molly/11OCT5.OIF: [testng] [2024-10-01 01:44:41,476] [pool-1-thread-11] Initializing /data/molly/11OCT9.OIF: [testng] [2024-10-01 01:44:54,709] [pool-1-thread-1] Initializing /data/johannes/step2.bmp: [testng] [2024-10-01 01:44:56,144] [pool-1-thread-1] Initializing /data/aryeh/control_test.oib: [testng] [2024-10-01 01:45:01,766] [pool-1-thread-6] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-10-01 01:45:04,489] [pool-1-thread-6] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-10-01 01:45:06,990] [pool-1-thread-6] Initializing /data/molly/11OCT7.OIF: [testng] [2024-10-01 01:45:38,680] [pool-1-thread-1] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-10-01 01:46:54,298] [pool-1-thread-8] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-10-01 01:46:58,640] [pool-1-thread-8] Initializing /data/yasunori/series_1.oib: [testng] [2024-10-01 01:47:04,149] [pool-1-thread-8] Initializing /data/glen/singleseqline.oif: [testng] [2024-10-01 01:47:14,714] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-10-01 01:47:18,758] [pool-1-thread-1] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-10-01 01:47:21,035] [pool-1-thread-1] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-10-01 01:47:27,971] [pool-1-thread-8] Initializing /data/brian/lambda02nm.oib: [testng] [2024-10-01 01:47:31,868] [pool-1-thread-8] Initializing /data/jae/Image0001.oib: [testng] [2024-10-01 01:47:35,098] [pool-1-thread-8] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-10-01 01:47:37,810] [pool-1-thread-1] Initializing /data/molly/11OCT11.OIF: [testng] [2024-10-01 01:47:55,175] [pool-1-thread-12] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-10-01 01:47:58,023] [pool-1-thread-12] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-10-01 01:48:45,404] [pool-1-thread-8] Initializing /data/christian/20min.oif: [testng] [2024-10-01 01:48:54,199] [pool-1-thread-8] Initializing /data/tom/zseries-test.oib: [testng] [2024-10-01 01:48:59,693] [pool-1-thread-8] Initializing /data/johannes/step3.bmp: [testng] [2024-10-01 01:49:01,078] [pool-1-thread-8] Initializing /data/david/Image0016.oib: [testng] [2024-10-01 01:49:02,994] [pool-1-thread-8] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-10-01 01:49:06,082] [pool-1-thread-8] Initializing /data/marc/V0606J.oib: [testng] [2024-10-01 01:49:19,870] [pool-1-thread-9] Initializing /data/kay/IM2pg.oib: [testng] [2024-10-01 01:49:20,710] [pool-1-thread-8] Initializing /data/glen/4205basal106072.oif: [testng] [2024-10-01 01:49:29,273] [pool-1-thread-9] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-10-01 01:49:33,317] [pool-1-thread-9] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-10-01 01:50:27,137] [pool-1-thread-3] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-10-01 01:51:00,887] [pool-1-thread-3] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-10-01 01:51:02,288] [pool-1-thread-3] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-10-01 01:51:10,202] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-10-01 01:51:17,774] [pool-1-thread-3] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-10-01 01:51:25,337] [pool-1-thread-3] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-10-01 01:51:33,068] [pool-1-thread-3] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-10-01 01:51:39,735] [pool-1-thread-3] Initializing /data/molly/11OCT8.OIF: [testng] [2024-10-01 01:52:35,912] [pool-1-thread-5] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-10-01 01:56:29,583] [pool-1-thread-7] Initializing /data/david/Image0016.oif: [testng] [2024-10-01 01:56:55,731] [pool-1-thread-2] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-10-01 01:57:02,096] [pool-1-thread-2] Initializing /data/molly/11OCT10.OIF: [testng] [2024-10-01 01:57:36,363] [pool-1-thread-7] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-10-01 01:57:42,714] [pool-1-thread-7] Initializing /data/simon/used_to_work.oib: [testng] [2024-10-01 01:57:54,512] [pool-1-thread-7] Initializing /data/karl/Image0009.oib: [testng] [2024-10-01 01:57:57,505] [pool-1-thread-7] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-10-01 01:58:03,722] [pool-1-thread-7] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-10-01 01:59:30,108] [pool-1-thread-9] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-10-01 01:59:33,893] [pool-1-thread-9] Initializing /data/glen/notsaturated.oif: [testng] [2024-10-01 02:00:02,674] [pool-1-thread-6] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-10-01 02:00:05,678] [pool-1-thread-6] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-10-01 02:05:35,314] [pool-1-thread-1] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-10-01 02:05:36,710] [pool-1-thread-9] Initializing /data/pedro/plv-test.oib: [testng] [2024-10-01 02:05:40,379] [pool-1-thread-1] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-10-01 02:05:42,420] [pool-1-thread-9] Initializing /data/brian/Kaede15.oib: [testng] [2024-10-01 02:05:49,805] [pool-1-thread-9] Initializing /data/yoshihito/XY.oif: [testng] [2024-10-01 02:06:14,791] [pool-1-thread-9] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-10-01 02:06:22,304] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-10-01 02:06:22,889] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-10-01 02:06:27,833] [pool-1-thread-1] Initializing /data/johannes/step4b.bmp: [testng] [2024-10-01 02:06:29,773] [pool-1-thread-1] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-10-01 02:06:31,284] [pool-1-thread-9] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-10-01 02:06:34,467] [pool-1-thread-1] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-10-01 02:06:37,723] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-10-01 02:06:39,684] [pool-1-thread-1] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-10-01 02:06:42,990] [pool-1-thread-9] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-10-01 02:06:44,058] [pool-1-thread-1] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-10-01 02:06:52,755] [pool-1-thread-9] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-10-01 02:06:55,632] [pool-1-thread-9] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-10-01 02:07:24,501] [pool-1-thread-9] Initializing /data/glen/simulstack.oif: [testng] [2024-10-01 02:08:19,971] [pool-1-thread-4] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-10-01 02:08:28,791] [pool-1-thread-4] Initializing /data/glen/singleseqline.oib: [testng] [2024-10-01 02:08:33,627] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-10-01 02:08:40,644] [pool-1-thread-4] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-10-01 02:08:45,106] [pool-1-thread-4] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-10-01 02:08:56,407] [pool-1-thread-5] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-10-01 02:08:56,903] [pool-1-thread-3] Initializing /data/chris/missegragation-15.oib: [testng] [2024-10-01 02:08:59,563] [pool-1-thread-3] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-10-01 02:09:00,420] [pool-1-thread-5] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-10-01 02:09:16,604] [pool-1-thread-8] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-10-01 02:09:26,127] [pool-1-thread-5] Initializing /data/glen/simulstack.oib: [testng] [2024-10-01 02:09:27,784] [pool-1-thread-3] Initializing /data/tom/RGB-1.avi: [testng] [2024-10-01 02:09:28,962] [pool-1-thread-4] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-10-01 02:09:29,615] [pool-1-thread-12] Initializing /data/johannes/step4.bmp: [testng] [2024-10-01 02:09:29,700] [pool-1-thread-5] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-10-01 02:09:34,144] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-10-01 02:09:35,956] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-10-01 02:09:36,636] [pool-1-thread-4] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-10-01 02:09:39,280] [pool-1-thread-3] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-10-01 02:09:40,029] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-10-01 02:09:41,203] [pool-1-thread-12] Initializing /data/glen/singlesimul.oib: [testng] [2024-10-01 02:09:43,497] [pool-1-thread-3] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-10-01 02:09:43,822] [pool-1-thread-12] Initializing /data/glen/notsaturated.oib: [testng] [2024-10-01 02:09:46,107] [pool-1-thread-4] Initializing /data/glen/singlesimul.oif: [testng] [2024-10-01 02:09:47,698] [pool-1-thread-3] Initializing /data/allan/62909#1.oib: [testng] [2024-10-01 02:09:48,825] [pool-1-thread-12] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-10-01 02:09:50,396] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-10-01 02:09:55,055] [pool-1-thread-3] Initializing /data/molly/11OCT3.OIF: [testng] [2024-10-01 02:11:02,341] [pool-1-thread-8] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-10-01 02:11:05,308] [pool-1-thread-8] Initializing /data/yoshihito/XY.oib: [testng] [2024-10-01 02:11:07,949] [pool-1-thread-8] Initializing /data/glen/seqlinestack.oif: [testng] [2024-10-01 02:11:20,040] [pool-1-thread-12] Initializing /data/marc/V0606L.oib: [testng] [2024-10-01 02:11:23,491] [pool-1-thread-4] Initializing /data/johannes/step1.bmp: [testng] [2024-10-01 02:11:25,421] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-10-01 02:11:26,304] [pool-1-thread-6] Initializing /data/glen/Null file/test change.oif: [testng] 03:01:51,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:01:51,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:51,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-01_03-01-51.log] [testng] 03:01:51,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d151d89 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 84 minutes 56 seconds Finished: SUCCESS