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Started by upstream project "BIOFORMATS-test-repo" build number 206
originally caused by:
 Started by upstream project "Trigger" build number 232
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins1584595171816845841.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_32688_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:13:16,119 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:13:16,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 02:13:16,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:13:16,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:13:16,124 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:13:16,124 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:13:16,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:13:16,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:13:16,126 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:13:16,127 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:13:16,128 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:13:16,128 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:13:16,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:13:16,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:13:16,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:13:16,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:13:16,402 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:13:16,402 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:13:16,402 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:13:16,402 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:13:16,402 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 02:13:16,403 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 02:13:16,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-01 02:13:16,415] [main] java.version = 11.0.16
   [testng] 02:13:16,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:13:16,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:16,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-01_02-13-16.log]
   [testng] 02:13:16,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-10-01 02:13:16,470] [main] testng.directory = /data
   [testng] [2024-10-01 02:13:16,470] [main] testng.configDirectory = /config
   [testng] [2024-10-01 02:13:16,482] [main] testng.multiplier = 1.0
   [testng] [2024-10-01 02:13:16,483] [main] testng.in-memory = false
   [testng] [2024-10-01 02:13:16,483] [main] testng.allow-missing = false
   [testng] [2024-10-01 02:13:16,484] [main] user.language = en
   [testng] [2024-10-01 02:13:16,484] [main] user.country = ${user.country}
   [testng] [2024-10-01 02:13:16,484] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-01 02:13:17,475] [main] ----------------------------------------
   [testng] [2024-10-01 02:13:17,475] [main] Total files: 15
   [testng] [2024-10-01 02:13:17,476] [main] Scan time: 0.991 s (66 ms/file)
   [testng] [2024-10-01 02:13:17,476] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-01 02:13:27,975] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: 
   [testng] 02:13:27,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:13:27,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:27,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-01_02-13-27.log]
   [testng] 02:13:27,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10a1369 - End of configuration.
   [testng] [2024-10-01 02:13:28,147] [pool-1-thread-12] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: 
   [testng] 02:13:28,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:13:28,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:28,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-01_02-13-28.log]
   [testng] 02:13:28,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d3830b2 - End of configuration.
   [testng] [2024-10-01 02:13:28,369] [pool-1-thread-11] Initializing /data/qa-17215/IBSR01.mnc: 
   [testng] 02:13:28,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:13:28,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:28,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-01_02-13-28.log]
   [testng] 02:13:28,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f7a338d - End of configuration.
   [testng] [2024-10-01 02:13:28,718] [pool-1-thread-10] Initializing /data/daren/test_32bit_float.mnc: 
   [testng] 02:13:28,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:13:28,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:28,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-01_02-13-28.log]
   [testng] 02:13:28,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c5f23a6 - End of configuration.
   [testng] [2024-10-01 02:13:29,341] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc: 
   [testng] 02:13:29,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:13:29,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:29,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-01_02-13-29.log]
   [testng] 02:13:29,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54d34eec - End of configuration.
   [testng] [2024-10-01 02:13:29,665] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc: 
   [testng] 02:13:29,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:13:29,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:29,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-01_02-13-29.log]
   [testng] 02:13:29,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cd06dca - End of configuration.
   [testng] [2024-10-01 02:13:29,809] [pool-1-thread-7] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc: 
   [testng] 02:13:29,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:13:29,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:29,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-01_02-13-29.log]
   [testng] 02:13:29,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c5df1f7 - End of configuration.
   [testng] [2024-10-01 02:13:31,800] [pool-1-thread-6] Initializing /data/bigbrain/pm6479o.mnc: 
   [testng] 02:13:31,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:13:31,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:31,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-01_02-13-31.log]
   [testng] 02:13:31,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23d4a626 - End of configuration.
   [testng] [2024-10-01 02:13:32,997] [pool-1-thread-5] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc: 
   [testng] 02:13:32,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:13:32,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:32,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-01_02-13-32.log]
   [testng] 02:13:32,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5437f8 - End of configuration.
   [testng] [2024-10-01 02:13:35,297] [pool-1-thread-4] Initializing /data/samples/N3/average_305_mask_1mm.mnc: 
   [testng] 02:13:35,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:13:35,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:35,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-01_02-13-35.log]
   [testng] 02:13:35,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e45472f - End of configuration.
   [testng] [2024-10-01 02:13:35,467] [pool-1-thread-3] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: 
   [testng] 02:13:35,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:13:35,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:35,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-01_02-13-35.log]
   [testng] 02:13:35,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@366e7bca - End of configuration.
   [testng] [2024-10-01 02:13:35,670] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: 
   [testng] 02:13:35,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:13:35,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:13:35,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-01_02-13-35.log]
   [testng] 02:13:35,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64ea6b18 - End of configuration.

BUILD SUCCESSFUL
Total time: 42 seconds
Finished: SUCCESS