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Started by upstream project "BIOFORMATS-test-repo" build number 207 originally caused by: Started by upstream project "Trigger" build number 233 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15628150435154150059.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32822_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:12:16,667 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:12:16,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 02:12:16,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:12:16,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:12:16,670 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:12:16,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:12:16,671 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:12:16,671 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:12:16,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:12:16,672 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:12:16,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:12:16,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:12:16,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:12:16,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:12:16,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:12:16,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:12:16,872 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:12:16,872 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:12:16,872 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:12:16,872 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:12:16,873 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 02:12:16,874 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 02:12:16,874 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-02 02:12:16,882] [main] java.version = 17.0.2 [testng] 02:12:16,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:12:16,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:16,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-02_02-12-16.log] [testng] 02:12:16,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-10-02 02:12:16,929] [main] testng.directory = /data [testng] [2024-10-02 02:12:16,930] [main] testng.configDirectory = /config [testng] [2024-10-02 02:12:16,938] [main] testng.multiplier = 1.0 [testng] [2024-10-02 02:12:16,939] [main] testng.in-memory = false [testng] [2024-10-02 02:12:16,939] [main] testng.allow-missing = false [testng] [2024-10-02 02:12:16,939] [main] user.language = en [testng] [2024-10-02 02:12:16,940] [main] user.country = ${user.country} [testng] [2024-10-02 02:12:16,940] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-02 02:13:24,256] [main] ---------------------------------------- [testng] [2024-10-02 02:13:24,256] [main] Total files: 259 [testng] [2024-10-02 02:13:24,256] [main] Scan time: 67.316 s (259 ms/file) [testng] [2024-10-02 02:13:24,256] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-02 02:54:13,507] [pool-1-thread-1] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] 02:54:13,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:54:13,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:13,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-02_02-54-13.log] [testng] 02:54:13,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7816b0a8 - End of configuration. [testng] [2024-10-02 02:54:16,734] [pool-1-thread-12] Initializing /data/yoshihito/XY.oif: [testng] 02:54:16,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:54:16,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:16,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-02_02-54-16.log] [testng] 02:54:16,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c0ac1f7 - End of configuration. [testng] [2024-10-02 02:54:20,657] [pool-1-thread-11] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] 02:54:20,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:54:20,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:20,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-02_02-54-20.log] [testng] 02:54:20,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@763c82e3 - End of configuration. [testng] [2024-10-02 02:54:23,508] [pool-1-thread-10] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] 02:54:23,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:54:23,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:23,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-02_02-54-23.log] [testng] 02:54:23,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26f5dea8 - End of configuration. [testng] [2024-10-02 02:54:25,960] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] 02:54:25,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:54:25,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:25,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-02_02-54-25.log] [testng] 02:54:25,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12e898bc - End of configuration. [testng] [2024-10-02 02:54:28,513] [pool-1-thread-8] Initializing /data/glen/111407.oif: [testng] 02:54:28,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:54:28,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:28,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-02_02-54-28.log] [testng] 02:54:28,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7112bba6 - End of configuration. [testng] [2024-10-02 02:54:51,363] [pool-1-thread-7] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] 02:54:51,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:54:51,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:51,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-02_02-54-51.log] [testng] 02:54:51,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b40e4ec - End of configuration. [testng] [2024-10-02 02:54:54,262] [pool-1-thread-6] Initializing /data/stefan/test-with-stefan071024.oib: [testng] 02:54:54,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:54:54,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:54,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-02_02-54-54.log] [testng] 02:54:54,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ea9c89 - End of configuration. [testng] [2024-10-02 02:54:58,282] [pool-1-thread-5] Initializing /data/johannes/Image0016/Image0016.oif: [testng] 02:54:58,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:54:58,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:58,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-02_02-54-58.log] [testng] 02:54:58,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51efdebe - End of configuration. [testng] [2024-10-02 02:55:09,824] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] 02:55:09,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:55:09,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:55:09,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-02_02-55-09.log] [testng] 02:55:09,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b2c2862 - End of configuration. [testng] [2024-10-02 02:55:12,702] [pool-1-thread-3] Initializing /data/glen/simulstack.oif: [testng] 02:55:12,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:55:12,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:55:12,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-02_02-55-12.log] [testng] 02:55:12,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@275be4c1 - End of configuration. [testng] [2024-10-02 02:55:32,382] [pool-1-thread-2] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] 02:55:32,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:55:32,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:55:32,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-02_02-55-32.log] [testng] 02:55:32,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ddc5575 - End of configuration. [testng] [2024-10-02 02:55:52,937] [pool-1-thread-7] Initializing /data/aryeh/1h.oib: [testng] [2024-10-02 02:55:56,601] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-10-02 02:56:00,280] [pool-1-thread-9] Initializing /data/sten/01.oib: [testng] [2024-10-02 02:56:02,877] [pool-1-thread-10] Initializing /data/molly/11OCT10.OIF: [testng] [2024-10-02 02:58:43,206] [pool-1-thread-2] Initializing /data/molly/11OCT9.OIF: [testng] [2024-10-02 03:03:03,512] [pool-1-thread-4] Initializing /data/brian/Kaede15.oib: [testng] [2024-10-02 03:03:07,570] [pool-1-thread-1] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-10-02 03:03:11,686] [pool-1-thread-6] Initializing /data/glen/singleseqframe.oib: [testng] [2024-10-02 03:03:33,961] [pool-1-thread-9] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-10-02 03:03:39,658] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-10-02 03:03:44,774] [pool-1-thread-7] Initializing /data/glen/singleseqframe.oif: [testng] [2024-10-02 03:03:54,216] [pool-1-thread-1] Initializing /data/michael/CELL3.oib: [testng] [2024-10-02 03:03:57,913] [pool-1-thread-11] Initializing /data/glen/Image0002.oif: [testng] [2024-10-02 03:04:33,678] [pool-1-thread-6] Initializing /data/glen/Null file/test change.oif: [testng] [2024-10-02 03:04:55,300] [pool-1-thread-9] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-10-02 03:05:03,154] [pool-1-thread-1] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-10-02 03:05:30,879] [pool-1-thread-12] Initializing /data/david/Image0016.oif: [testng] [2024-10-02 03:05:55,165] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-10-02 03:06:07,413] [pool-1-thread-9] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-10-02 03:07:05,664] [pool-1-thread-1] Initializing /data/glen/simulstack.oib: [testng] [2024-10-02 03:07:11,410] [pool-1-thread-4] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-10-02 03:07:36,313] [pool-1-thread-1] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-10-02 03:07:42,925] [pool-1-thread-4] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-10-02 03:08:04,891] [pool-1-thread-1] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-10-02 03:08:14,760] [pool-1-thread-4] Initializing /data/yoshihito/XY.oib: [testng] [2024-10-02 03:08:41,061] [pool-1-thread-1] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-10-02 03:08:45,919] [pool-1-thread-4] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-10-02 03:09:10,751] [pool-1-thread-1] Initializing /data/tom/zseries-test.oib: [testng] [2024-10-02 03:09:22,385] [pool-1-thread-4] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-10-02 03:09:26,984] [pool-1-thread-6] Initializing /data/david/Image0016.oib: [testng] [2024-10-02 03:09:47,526] [pool-1-thread-1] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-10-02 03:09:55,881] [pool-1-thread-4] Initializing /data/brian/FLIP.oib: [testng] [2024-10-02 03:10:00,962] [pool-1-thread-6] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-10-02 03:10:20,652] [pool-1-thread-1] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-10-02 03:10:48,378] [pool-1-thread-6] Initializing /data/molly/11OCT2.OIF: [testng] [2024-10-02 03:15:47,558] [pool-1-thread-7] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-10-02 03:15:52,693] [pool-1-thread-4] Initializing /data/molly/11OCT8.OIF: [testng] [2024-10-02 03:18:40,773] [pool-1-thread-7] Initializing /data/glen/singleseqline.oif: [testng] [2024-10-02 03:19:01,471] [pool-1-thread-1] Initializing /data/molly/11OCT6.OIF: [testng] [2024-10-02 03:21:54,077] [pool-1-thread-12] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-10-02 03:22:23,337] [pool-1-thread-12] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-10-02 03:36:42,823] [pool-1-thread-5] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-10-02 03:37:05,794] [pool-1-thread-5] Initializing /data/glen/singlesimul.oif: [testng] [2024-10-02 03:37:55,132] [pool-1-thread-7] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-10-02 03:40:08,667] [pool-1-thread-5] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-10-02 03:45:59,446] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-10-02 03:46:16,844] [pool-1-thread-7] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-10-02 03:46:32,290] [pool-1-thread-7] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-10-02 04:10:53,675] [pool-1-thread-8] Initializing /data/simon/never_worked.oib: [testng] [2024-10-02 04:11:09,188] [pool-1-thread-8] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-10-02 04:11:46,826] [pool-1-thread-3] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-10-02 04:11:51,962] [pool-1-thread-3] Initializing /data/glen/notsaturated.oib: [testng] [2024-10-02 04:12:03,168] [pool-1-thread-3] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-10-02 04:12:42,824] [pool-1-thread-8] Initializing /data/monica/Image0056.oif: [testng] [2024-10-02 04:19:00,399] [pool-1-thread-8] Initializing /data/johannes/step5b.bmp: [testng] [2024-10-02 04:19:18,051] [pool-1-thread-8] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-10-02 04:20:39,809] [pool-1-thread-8] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-10-02 04:21:18,065] [pool-1-thread-8] Initializing /data/yasunori/series_1.oib: [testng] [2024-10-02 04:21:48,363] [pool-1-thread-8] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-10-02 04:22:16,879] [pool-1-thread-8] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-10-02 04:24:37,006] [pool-1-thread-11] Initializing /data/tom/RGB-1.avi: [testng] 04:24:37,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:24:37,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:37,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-02_04-24-37.log] [testng] 04:24:37,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57bf56ec - End of configuration. [testng] [2024-10-02 04:24:52,785] [pool-1-thread-11] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-10-02 04:25:12,695] [pool-1-thread-11] Initializing /data/molly/11OCT5.OIF: [testng] [2024-10-02 04:29:06,874] [pool-1-thread-7] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-10-02 04:29:28,644] [pool-1-thread-7] Initializing /data/jae/Image0001.oib: [testng] [2024-10-02 04:29:55,717] [pool-1-thread-7] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-10-02 04:30:17,797] [pool-1-thread-7] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-10-02 04:32:18,548] [pool-1-thread-7] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-10-02 04:37:28,432] [pool-1-thread-9] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-10-02 04:37:40,527] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-10-02 04:37:49,898] [pool-1-thread-9] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 04:42:09,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:42:09,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:42:09,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-02_04-42-09.log] [testng] 04:42:09,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@693bda17 - End of configuration. [testng] [2024-10-02 04:46:20,422] [pool-1-thread-4] Initializing /data/glen/4205basal106072.oif: [testng] 04:49:38,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:49:38,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:49:38,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-02_04-49-38.log] [testng] 04:49:38,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a8fd004 - End of configuration. [testng] [2024-10-02 04:50:28,230] [pool-1-thread-3] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-10-02 04:50:30,932] [pool-1-thread-1] Initializing /data/glen/singleseqline.oib: [testng] [2024-10-02 04:50:50,408] [pool-1-thread-1] Initializing /data/kay/IM2pg.oib: [testng] [2024-10-02 04:50:53,920] [pool-1-thread-3] Initializing /data/pedro/plv-test.oib: [testng] [2024-10-02 04:51:03,037] [pool-1-thread-3] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-10-02 04:51:07,427] [pool-1-thread-1] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-10-02 04:51:27,815] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-10-02 04:51:40,181] [pool-1-thread-3] Initializing /data/johannes/step2.bmp: [testng] [2024-10-02 04:51:44,680] [pool-1-thread-3] Initializing /data/glen/notsaturated.oif: [testng] [2024-10-02 04:57:11,594] [pool-1-thread-10] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-10-02 04:57:25,085] [pool-1-thread-10] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-10-02 04:57:34,920] [pool-1-thread-1] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-10-02 04:57:38,580] [pool-1-thread-10] Initializing /data/chris/missegragation-15.oib: [testng] [2024-10-02 04:57:47,447] [pool-1-thread-10] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-10-02 04:57:48,790] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oib: [testng] [2024-10-02 04:57:57,831] [pool-1-thread-10] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-10-02 04:58:01,607] [pool-1-thread-1] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-10-02 04:58:10,274] [pool-1-thread-1] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-10-02 04:59:14,746] [pool-1-thread-10] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-10-02 05:01:29,231] [pool-1-thread-10] Initializing /data/johannes/step1.bmp: [testng] [2024-10-02 05:01:35,594] [pool-1-thread-10] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-10-02 05:01:53,872] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-10-02 05:02:10,548] [pool-1-thread-10] Initializing /data/christian/20min.oif: [testng] [2024-10-02 05:03:19,159] [pool-1-thread-10] Initializing /data/marc/V0606L.oib: [testng] [2024-10-02 05:03:49,062] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-10-02 05:04:03,905] [pool-1-thread-10] Initializing /data/molly/11OCT11.OIF: [testng] [2024-10-02 05:06:27,307] [pool-1-thread-1] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-10-02 05:06:41,814] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-10-02 05:06:54,801] [pool-1-thread-1] Initializing /data/johannes/step3.bmp: [testng] [2024-10-02 05:07:03,649] [pool-1-thread-1] Initializing /data/molly/11OCT7.OIF: [testng] [2024-10-02 05:10:14,062] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-10-02 05:10:26,321] [pool-1-thread-8] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-10-02 05:10:39,238] [pool-1-thread-8] Initializing /data/marc/V0606J.oib: [testng] [2024-10-02 05:11:09,603] [pool-1-thread-8] Initializing /data/satoshi/60x_5x_1.oif: [testng] 05:11:45,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:11:45,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:45,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-02_05-11-45.log] [testng] 05:11:45,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cdade5b - End of configuration. [testng] [2024-10-02 05:12:02,834] [pool-1-thread-5] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-10-02 05:12:11,856] [pool-1-thread-5] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-10-02 05:12:15,374] [pool-1-thread-7] Initializing /data/karl/Image0009.oib: [testng] [2024-10-02 05:12:21,774] [pool-1-thread-7] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-10-02 05:13:27,668] [pool-1-thread-3] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-10-02 05:13:39,922] [pool-1-thread-3] Initializing /data/allan/62909#1.oib: [testng] [2024-10-02 05:13:47,989] [pool-1-thread-3] Initializing /data/molly/11OCT3.OIF: [testng] 05:15:41,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:15:41,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:41,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-02_05-15-41.log] [testng] 05:15:41,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e4c5105 - End of configuration. [testng] [2024-10-02 05:18:34,821] [pool-1-thread-7] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-10-02 05:18:45,388] [pool-1-thread-5] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-10-02 05:19:19,437] [pool-1-thread-7] Initializing /data/molly/11OCT4.OIF: [testng] [2024-10-02 05:24:38,277] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-10-02 05:24:47,697] [pool-1-thread-8] Initializing /data/johannes/step4b.bmp: [testng] [2024-10-02 05:24:52,673] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-10-02 05:25:03,720] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-10-02 05:25:15,198] [pool-1-thread-8] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-10-02 05:25:36,249] [pool-1-thread-8] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-10-02 05:26:06,977] [pool-1-thread-2] Initializing /data/aryeh/control_test.oib: [testng] [2024-10-02 05:26:24,034] [pool-1-thread-11] Initializing /data/glen/seqlinestack.oif: [testng] [2024-10-02 05:27:40,543] [pool-1-thread-2] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-10-02 05:27:55,684] [pool-1-thread-2] Initializing /data/simon/used_to_work.oib: [testng] [2024-10-02 05:28:06,054] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-10-02 05:28:17,898] [pool-1-thread-2] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-10-02 05:28:31,240] [pool-1-thread-2] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-10-02 05:28:38,790] [pool-1-thread-2] Initializing /data/brian/lambda02nm.oib: [testng] [2024-10-02 05:28:50,618] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-10-02 05:29:03,910] [pool-1-thread-2] Initializing /data/johannes/step4.bmp: [testng] 07:08:28,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:08:28,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:08:28,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-02_07-08-28.log] [testng] 07:08:28,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3540607a - End of configuration. [testng] 07:17:08,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:17:08,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:17:08,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-02_07-17-08.log] [testng] 07:17:08,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24104ab9 - End of configuration. [testng] 07:31:32,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:31:32,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:31:32,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-02_07-31-32.log] [testng] 07:31:32,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62b8bed3 - End of configuration. [testng] 07:39:40,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:39:40,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:40,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-02_07-39-40.log] [testng] 07:39:40,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e9c23b7 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 327 minutes 28 seconds Finished: SUCCESS