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Started by upstream project "BIOFORMATS-test-repo" build number 207 originally caused by: Started by upstream project "Trigger" build number 233 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins12554252722377298262.sh + '[' apng = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32907_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 07:51:54,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:51:54,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 07:51:54,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:51:55,000 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:51:55,001 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:51:55,001 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:51:55,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:51:55,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:51:55,002 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:51:55,002 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:51:55,003 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:51:55,003 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:51:55,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:51:55,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:51:55,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:51:55,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:51:55,178 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:51:55,178 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:51:55,178 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:51:55,178 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:51:55,178 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 07:51:55,179 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 07:51:55,179 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 177 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-02 07:51:55,187] [main] java.version = 17.0.2 [testng] 07:51:55,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:51:55,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:55,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-02_07-51-55.log] [testng] 07:51:55,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-10-02 07:51:55,231] [main] testng.directory = /data [testng] [2024-10-02 07:51:55,231] [main] testng.configDirectory = /config [testng] [2024-10-02 07:51:55,239] [main] testng.multiplier = 1.0 [testng] [2024-10-02 07:51:55,240] [main] testng.in-memory = false [testng] [2024-10-02 07:51:55,240] [main] testng.allow-missing = false [testng] [2024-10-02 07:51:55,240] [main] user.language = en [testng] [2024-10-02 07:51:55,240] [main] user.country = ${user.country} [testng] [2024-10-02 07:51:55,240] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-02 07:51:57,323] [main] ---------------------------------------- [testng] [2024-10-02 07:51:57,323] [main] Total files: 21 [testng] [2024-10-02 07:51:57,323] [main] Scan time: 2.083 s (99 ms/file) [testng] [2024-10-02 07:51:57,323] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-02 07:52:32,430] [pool-1-thread-1] Initializing /data/samples/StarV838.png: [testng] 07:52:32,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:52:32,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:32,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-02_07-52-32.log] [testng] 07:52:32,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73433ac3 - End of configuration. [testng] [2024-10-02 07:52:33,002] [pool-1-thread-12] Initializing /data/samples/MoonPhases.png: [testng] 07:52:33,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:52:33,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:33,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-02_07-52-33.log] [testng] 07:52:33,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c554ea6 - End of configuration. [testng] [2024-10-02 07:52:34,750] [pool-1-thread-11] Initializing /data/samples/william_wong02.png: [testng] 07:52:34,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:52:34,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:34,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-02_07-52-34.log] [testng] 07:52:34,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@337f2ea2 - End of configuration. [testng] [2024-10-02 07:52:35,349] [pool-1-thread-10] Initializing /data/samples/joanna_viera01.png: [testng] 07:52:35,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:52:35,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:35,350 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-02_07-52-35.log] [testng] 07:52:35,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35a95803 - End of configuration. [testng] [2024-10-02 07:52:36,943] [pool-1-thread-9] Initializing /data/colin/test.sfstdge.png: [testng] 07:52:36,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:52:36,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:36,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-02_07-52-36.log] [testng] 07:52:36,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2df68f02 - End of configuration. [testng] [2024-10-02 07:52:39,005] [pool-1-thread-8] Initializing /data/samples/atom.png: [testng] 07:52:39,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:52:39,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:39,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-02_07-52-39.log] [testng] 07:52:39,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16a223b4 - End of configuration. [testng] [2024-10-02 07:52:39,336] [pool-1-thread-7] Initializing /data/samples/william_wong04.png: [testng] 07:52:39,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:52:39,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:39,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-02_07-52-39.log] [testng] 07:52:39,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74681882 - End of configuration. [testng] [2024-10-02 07:52:39,424] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 07:52:39,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:52:39,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:39,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-02_07-52-39.log] [testng] 07:52:39,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@165bfb69 - End of configuration. [testng] [2024-10-02 07:52:52,766] [pool-1-thread-5] Initializing /data/qa-7473/x.png: [testng] 07:52:52,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:52:52,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:52,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-02_07-52-52.log] [testng] 07:52:52,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51ae88a8 - End of configuration. [testng] [2024-10-02 07:52:52,818] [pool-1-thread-4] Initializing /data/samples/william_wong05.png: [testng] 07:52:52,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:52:52,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:52,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-02_07-52-52.log] [testng] 07:52:52,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e0a6627 - End of configuration. [testng] [2024-10-02 07:52:52,868] [pool-1-thread-3] Initializing /data/samples/phug_logo.png: [testng] 07:52:52,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:52:52,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:52,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-02_07-52-52.log] [testng] 07:52:52,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11ea2d7a - End of configuration. [testng] [2024-10-02 07:52:52,922] [pool-1-thread-2] Initializing /data/samples/spinfox.png: [testng] 07:52:52,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:52:52,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:52,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-02_07-52-52.log] [testng] 07:52:52,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38ae28ec - End of configuration. [testng] [2024-10-02 07:53:11,769] [pool-1-thread-5] Initializing /data/samples/chompy2.png: [testng] [2024-10-02 07:53:13,099] [pool-1-thread-9] Initializing /data/samples/william_wong01.png: [testng] [2024-10-02 07:53:13,969] [pool-1-thread-4] Initializing /data/samples/daniel_coltri_two.png: [testng] [2024-10-02 07:53:14,042] [pool-1-thread-11] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-10-02 07:53:14,088] [pool-1-thread-7] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-10-02 07:53:14,146] [pool-1-thread-2] Initializing /data/samples/monkey_apng.png: [testng] [2024-10-02 07:53:14,205] [pool-1-thread-3] Initializing /data/samples/orbit.png: [testng] [2024-10-02 07:53:14,279] [pool-1-thread-8] Initializing /data/samples/Sun.png: [testng] [2024-10-02 07:53:14,356] [pool-1-thread-12] Initializing /data/samples/Matrix.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 30 seconds Finished: SUCCESS