![[Jenkins]](/jenkins/static/d8ca237c/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 208 originally caused by: Started by upstream project "Trigger" build number 234 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5322445119521023703.sh + '[' targa = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_32982_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:38:26,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:38:26,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:38:26,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:38:26,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:38:26,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:38:26,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:38:26,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:38:26,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:38:26,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:38:26,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:38:26,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:38:26,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:38:26,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:38:26,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:38:26,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:38:26,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:38:26,484 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:38:26,484 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:38:26,484 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:38:26,484 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:38:26,484 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:38:26,485 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:38:26,485 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-03 01:38:26,495] [main] java.version = 21 [testng] 01:38:26,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:38:26,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:26,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-03_01-38-26.log] [testng] 01:38:26,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-10-03 01:38:26,563] [main] testng.directory = /data [testng] [2024-10-03 01:38:26,563] [main] testng.configDirectory = /config [testng] [2024-10-03 01:38:26,578] [main] testng.multiplier = 1.0 [testng] [2024-10-03 01:38:26,579] [main] testng.in-memory = false [testng] [2024-10-03 01:38:26,579] [main] testng.allow-missing = false [testng] [2024-10-03 01:38:26,579] [main] user.language = en [testng] [2024-10-03 01:38:26,579] [main] user.country = ${user.country} [testng] [2024-10-03 01:38:26,579] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-03 01:38:27,063] [main] ---------------------------------------- [testng] [2024-10-03 01:38:27,063] [main] Total files: 21 [testng] [2024-10-03 01:38:27,064] [main] Scan time: 0.484 s (23 ms/file) [testng] [2024-10-03 01:38:27,064] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-03 01:38:31,591] [pool-1-thread-1] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:38:31,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:38:31,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:31,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-03_01-38-31.log] [testng] 01:38:31,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6184a4f3 - End of configuration. [testng] [2024-10-03 01:38:31,927] [pool-1-thread-12] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:38:31,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:38:31,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:31,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-03_01-38-31.log] [testng] 01:38:31,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7204664d - End of configuration. [testng] [2024-10-03 01:38:32,183] [pool-1-thread-11] Initializing /data/samples/CTC16.TGA: [testng] 01:38:32,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:38:32,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:32,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-03_01-38-32.log] [testng] 01:38:32,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e4f7ec1 - End of configuration. [testng] [2024-10-03 01:38:32,459] [pool-1-thread-10] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:38:32,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:38:32,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:32,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-03_01-38-32.log] [testng] 01:38:32,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60770a2e - End of configuration. [testng] [2024-10-03 01:38:32,768] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA: [testng] 01:38:32,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:38:32,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:32,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-03_01-38-32.log] [testng] 01:38:32,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d2e6af6 - End of configuration. [testng] [2024-10-03 01:38:33,061] [pool-1-thread-8] Initializing /data/samples/XING_B16.TGA: [testng] 01:38:33,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:38:33,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:33,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-03_01-38-33.log] [testng] 01:38:33,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ee01919 - End of configuration. [testng] [2024-10-03 01:38:33,312] [pool-1-thread-7] Initializing /data/samples/FLAG_T32.TGA: [testng] 01:38:33,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:38:33,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:33,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-03_01-38-33.log] [testng] 01:38:33,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ec08d04 - End of configuration. [testng] [2024-10-03 01:38:33,464] [pool-1-thread-6] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:38:33,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:38:33,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:33,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-03_01-38-33.log] [testng] 01:38:33,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ead2317 - End of configuration. [testng] [2024-10-03 01:38:33,596] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA: [testng] 01:38:33,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:38:33,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:33,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-03_01-38-33.log] [testng] 01:38:33,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63b643da - End of configuration. [testng] [2024-10-03 01:38:33,782] [pool-1-thread-4] Initializing /data/samples/CBW8.TGA: [testng] 01:38:33,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:38:33,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:33,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-03_01-38-33.log] [testng] 01:38:33,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8e1d55 - End of configuration. [testng] [2024-10-03 01:38:34,090] [pool-1-thread-3] Initializing /data/samples/XING_T24.TGA: [testng] 01:38:34,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:38:34,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:34,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-03_01-38-34.log] [testng] 01:38:34,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2389ec92 - End of configuration. [testng] [2024-10-03 01:38:34,283] [pool-1-thread-2] Initializing /data/samples/MARBLES.TGA: [testng] 01:38:34,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:38:34,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:34,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-03_01-38-34.log] [testng] 01:38:34,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c414e92 - End of configuration. [testng] [2024-10-03 01:38:37,558] [pool-1-thread-4] Initializing /data/samples/XING_T32.TGA: [testng] [2024-10-03 01:38:37,700] [pool-1-thread-9] Initializing /data/samples/XING_T16.TGA: [testng] [2024-10-03 01:38:37,817] [pool-1-thread-10] Initializing /data/samples/UTC16.TGA: [testng] [2024-10-03 01:38:37,988] [pool-1-thread-11] Initializing /data/samples/UTC24.TGA: [testng] [2024-10-03 01:38:38,122] [pool-1-thread-6] Initializing /data/samples/CTC24.TGA: [testng] [2024-10-03 01:38:38,260] [pool-1-thread-12] Initializing /data/samples/UCM8.TGA: [testng] [2024-10-03 01:38:38,398] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA: [testng] [2024-10-03 01:38:38,518] [pool-1-thread-5] Initializing /data/samples/XING_B24.TGA: [testng] [2024-10-03 01:38:38,858] [pool-1-thread-3] Initializing /data/samples/UBW8.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 seconds Finished: SUCCESS