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Started by upstream project "BIOFORMATS-test-repo" build number 208 originally caused by: Started by upstream project "Trigger" build number 234 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins11556694605792842345.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33029_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:41:21,473 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:41:21,474 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:41:21,474 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:41:21,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:41:21,475 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:41:21,476 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:41:21,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:41:21,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:41:21,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:41:21,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:41:21,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:41:21,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:41:21,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:41:21,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:41:21,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:41:21,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:41:21,658 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:41:21,658 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:41:21,658 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:41:21,658 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:41:21,658 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:41:21,659 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:41:21,659 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-03 02:41:21,667] [main] java.version = 21 [testng] 02:41:21,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:41:21,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:21,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-03_02-41-21.log] [testng] 02:41:21,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-10-03 02:41:21,713] [main] testng.directory = /data [testng] [2024-10-03 02:41:21,713] [main] testng.configDirectory = /config [testng] [2024-10-03 02:41:21,721] [main] testng.multiplier = 1.0 [testng] [2024-10-03 02:41:21,722] [main] testng.in-memory = false [testng] [2024-10-03 02:41:21,722] [main] testng.allow-missing = false [testng] [2024-10-03 02:41:21,722] [main] user.language = en [testng] [2024-10-03 02:41:21,722] [main] user.country = ${user.country} [testng] [2024-10-03 02:41:21,722] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-03 02:53:23,206] [main] ---------------------------------------- [testng] [2024-10-03 02:53:23,206] [main] Total files: 7329 [testng] [2024-10-03 02:53:23,206] [main] Scan time: 721.484 s (98 ms/file) [testng] [2024-10-03 02:53:23,207] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-03 03:03:28,931] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] 03:03:28,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:03:28,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:28,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-03_03-03-28.log] [testng] 03:03:28,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52665f61 - End of configuration. [testng] [2024-10-03 03:03:30,358] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] 03:03:30,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:03:30,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:30,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-03_03-03-30.log] [testng] 03:03:30,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68e62a6d - End of configuration. [testng] [2024-10-03 03:03:31,789] [pool-1-thread-11] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] 03:03:31,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:03:31,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:31,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-03_03-03-31.log] [testng] 03:03:31,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62ab1930 - End of configuration. [testng] [2024-10-03 03:03:33,083] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] 03:03:33,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:03:33,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:33,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-03_03-03-33.log] [testng] 03:03:33,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d364f3f - End of configuration. [testng] [2024-10-03 03:03:34,407] [pool-1-thread-9] Initializing /data/graham/G_Wright deconvolved.stk: [testng] 03:03:34,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:03:34,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:34,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-03_03-03-34.log] [testng] 03:03:34,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52909a4 - End of configuration. [testng] [2024-10-03 03:03:35,652] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] 03:03:35,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:03:35,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:35,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-03_03-03-35.log] [testng] 03:03:35,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e944080 - End of configuration. [testng] [2024-10-03 03:03:37,042] [pool-1-thread-7] Initializing /data/qa-16915/m-01.tif: [testng] 03:03:37,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:03:37,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:37,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-03_03-03-37.log] [testng] 03:03:37,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7193dad2 - End of configuration. [testng] [2024-10-03 03:03:38,867] [pool-1-thread-6] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] 03:03:38,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:03:38,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:38,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-03_03-03-38.log] [testng] 03:03:38,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68efb960 - End of configuration. [testng] [2024-10-03 03:03:40,272] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] 03:03:40,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:03:40,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:40,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-03_03-03-40.log] [testng] 03:03:40,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33092da7 - End of configuration. [testng] [2024-10-03 03:03:45,433] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] 03:03:45,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:03:45,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:45,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-03_03-03-45.log] [testng] 03:03:45,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b8909d7 - End of configuration. [testng] [2024-10-03 03:03:46,817] [pool-1-thread-3] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] 03:03:46,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:03:46,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:46,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-03_03-03-46.log] [testng] 03:03:46,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32ce8978 - End of configuration. [testng] [2024-10-03 03:03:48,365] [pool-1-thread-2] Initializing /data/heiko/sample_3x3.stk: [testng] 03:03:48,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:03:48,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:48,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-03_03-03-48.log] [testng] 03:03:48,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2278f84b - End of configuration. [testng] [2024-10-03 03:03:57,904] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-03 03:03:59,566] [pool-1-thread-12] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-10-03 03:04:01,024] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-10-03 03:04:08,340] [pool-1-thread-1] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-10-03 03:04:09,775] [pool-1-thread-6] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-10-03 03:04:10,928] [pool-1-thread-10] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-10-03 03:04:12,381] [pool-1-thread-7] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-10-03 03:04:13,579] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-10-03 03:04:15,732] [pool-1-thread-2] Used files list does not include base file [testng] [2024-10-03 03:04:20,335] [pool-1-thread-11] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-10-03 03:04:50,298] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-10-03 03:04:52,069] [pool-1-thread-1] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-10-03 03:04:53,526] [pool-1-thread-7] Initializing /data/dave/Z Series.stk: [testng] [2024-10-03 03:04:54,816] [pool-1-thread-9] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-10-03 03:04:58,427] [pool-1-thread-3] Initializing /data/jerome/deconv.STK: [testng] [2024-10-03 03:04:59,775] [pool-1-thread-4] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-10-03 03:05:07,651] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-03 03:05:09,139] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-10-03 03:05:11,778] [pool-1-thread-3] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-10-03 03:05:13,527] [pool-1-thread-7] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-10-03 03:05:16,021] [pool-1-thread-1] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-10-03 03:05:17,522] [pool-1-thread-5] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-10-03 03:05:21,722] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-10-03 03:05:28,873] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-10-03 03:05:32,498] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-10-03 03:05:40,279] [pool-1-thread-6] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-10-03 03:05:42,075] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-10-03 03:05:43,829] [pool-1-thread-8] Used files list does not include base file [testng] [2024-10-03 03:05:43,861] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-10-03 03:05:46,357] [pool-1-thread-10] Used files list does not include base file [testng] [2024-10-03 03:05:46,358] [pool-1-thread-12] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-10-03 03:05:50,843] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-10-03 03:06:01,276] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-10-03 03:06:07,616] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-10-03 03:06:10,035] [pool-1-thread-2] Used files list does not include base file [testng] [2024-10-03 03:06:13,652] [pool-1-thread-3] Initializing /data/samples/zserEight.stk: [testng] [2024-10-03 03:06:16,623] [pool-1-thread-8] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-10-03 03:06:27,297] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-03 03:06:31,283] [pool-1-thread-3] Initializing 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Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-10-03 03:08:06,198] [pool-1-thread-9] Initializing /data/qa-16915/m-04.tif: [testng] [2024-10-03 03:08:12,169] [pool-1-thread-7] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-10-03 03:08:13,957] [pool-1-thread-2] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-10-03 03:08:15,680] [pool-1-thread-10] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-10-03 03:08:21,982] [pool-1-thread-12] Initializing /data/samples/10xcalib.stk: [testng] [2024-10-03 03:08:24,097] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-03 03:08:30,275] [pool-1-thread-10] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-10-03 03:08:32,155] [pool-1-thread-2] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-10-03 03:08:33,985] [pool-1-thread-7] Initializing 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[testng] [2024-10-03 03:09:54,956] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-10-03 03:10:17,978] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-10-03 03:10:23,330] [pool-1-thread-6] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-10-03 03:10:25,626] [pool-1-thread-8] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-10-03 03:10:31,266] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-10-03 03:10:33,398] [pool-1-thread-7] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-10-03 03:10:35,362] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-03 03:10:44,915] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-10-03 03:10:46,879] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] [2024-10-03 03:10:59,847] [pool-1-thread-8] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-10-03 03:11:13,292] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-10-03 03:11:16,075] [pool-1-thread-7] Initializing /data/josh/2101to600e.stk: [testng] [2024-10-03 03:11:27,156] [pool-1-thread-6] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-10-03 03:11:30,184] [pool-1-thread-10] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-10-03 03:11:41,202] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-10-03 03:11:46,738] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-10-03 03:11:52,133] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full 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03:13:02,483] [pool-1-thread-5] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-10-03 03:13:07,033] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-10-03 03:13:08,839] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-03 03:13:10,581] [pool-1-thread-2] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-10-03 03:13:14,118] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-10-03 03:13:29,215] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-10-03 03:13:35,229] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-10-03 03:13:38,001] [pool-1-thread-8] Initializing /data/alex/Selected FITC.stk: [testng] [2024-10-03 03:13:43,100] [pool-1-thread-2] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-10-03 03:13:44,811] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-10-03 03:13:46,810] [pool-1-thread-5] Used files list does not include base file [testng] [2024-10-03 03:13:48,341] [pool-1-thread-12] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-10-03 03:13:51,962] [pool-1-thread-8] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-10-03 03:14:13,451] [pool-1-thread-3] Initializing /data/josh/2101to600f.stk: [testng] [2024-10-03 03:14:33,012] [pool-1-thread-2] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-10-03 03:14:34,544] [pool-1-thread-12] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-10-03 03:14:36,292] [pool-1-thread-1] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-10-03 03:14:40,826] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-10-03 03:14:43,048] [pool-1-thread-5] Used files list does not include base file [testng] [2024-10-03 03:14:45,739] [pool-1-thread-2] Initializing /data/qa-16915/m-02.tif: [testng] [2024-10-03 03:14:47,588] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-10-03 03:14:49,094] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-10-03 03:14:50,655] [pool-1-thread-4] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-10-03 03:14:52,595] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-10-03 03:15:02,419] [pool-1-thread-7] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-10-03 03:15:04,092] [pool-1-thread-1] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-10-03 03:15:05,837] [pool-1-thread-2] Initializing 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/data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-10-03 03:17:41,926] [pool-1-thread-2] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-10-03 03:17:49,249] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-03 03:17:51,069] [pool-1-thread-1] Initializing /data/grant/X.STK: [testng] [2024-10-03 03:17:53,720] [pool-1-thread-2] Initializing /data/jae/RGB_s34.tif: [testng] [2024-10-03 03:18:00,500] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-10-03 03:18:02,325] [pool-1-thread-3] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-10-03 03:18:05,013] [pool-1-thread-12] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-10-03 03:18:08,932] [pool-1-thread-6] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-10-03 03:18:12,281] [pool-1-thread-2] Initializing /data/samples/zser24.stk: [testng] [2024-10-03 03:18:13,957] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-10-03 03:18:16,551] [pool-1-thread-1] Used files list does not include base file [testng] [2024-10-03 03:18:18,612] [pool-1-thread-3] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-10-03 03:18:22,515] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-10-03 03:18:25,044] [pool-1-thread-12] Used files list does not include base file [testng] [2024-10-03 03:18:25,953] [pool-1-thread-2] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-10-03 03:18:31,920] [pool-1-thread-4] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-10-03 03:18:34,715] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-10-03 03:18:36,705] [pool-1-thread-2] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-10-03 03:18:39,869] [pool-1-thread-7] Initializing /data/samples/zseries.stk: [testng] [2024-10-03 03:18:42,269] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-10-03 03:18:43,759] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-03 03:18:47,888] [pool-1-thread-2] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-10-03 03:18:51,056] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-10-03 03:18:58,140] [pool-1-thread-2] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-10-03 03:19:00,224] [pool-1-thread-7] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-10-03 03:19:02,447] [pool-1-thread-3] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-10-03 03:19:04,275] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-10-03 03:19:12,500] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-10-03 03:19:13,996] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-10-03 03:19:15,614] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-10-03 03:19:21,956] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-10-03 03:19:24,982] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-10-03 03:19:28,841] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-10-03 03:19:32,144] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-10-03 03:19:48,843] [pool-1-thread-3] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-10-03 03:19:50,520] [pool-1-thread-12] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-10-03 03:19:55,259] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-10-03 03:20:02,107] [pool-1-thread-6] Initializing /data/steve/Experiment2.tif: [testng] [2024-10-03 03:20:06,381] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-10-03 03:20:08,391] [pool-1-thread-3] Used files list does not include base file [testng] [2024-10-03 03:20:09,487] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-10-03 03:20:12,252] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-03 03:20:15,072] [pool-1-thread-6] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-10-03 03:20:24,351] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-10-03 03:20:26,344] [pool-1-thread-7] Used files list does not include base file [testng] [2024-10-03 03:20:39,844] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-10-03 03:20:58,199] [pool-1-thread-6] Initializing /data/thomas/test.tif: [testng] [2024-10-03 03:21:06,758] [pool-1-thread-6] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-10-03 03:21:17,384] [pool-1-thread-7] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-10-03 03:21:22,092] [pool-1-thread-6] Initializing /data/david/tl4.tif: [testng] [2024-10-03 03:21:27,313] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-10-03 03:21:33,309] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-10-03 03:21:37,169] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-10-03 03:21:38,670] [pool-1-thread-7] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-10-03 03:21:42,298] [pool-1-thread-1] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-10-03 03:21:45,393] [pool-1-thread-3] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-10-03 03:21:48,316] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-10-03 03:21:49,709] [pool-1-thread-7] Used files list does not include base file [testng] [2024-10-03 03:21:50,551] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-10-03 03:21:51,985] [pool-1-thread-6] Used files list does not include base file [testng] [2024-10-03 03:21:54,365] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-10-03 03:21:56,484] [pool-1-thread-1] Used files list does not include base file [testng] [2024-10-03 03:22:02,552] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-10-03 03:22:07,723] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-10-03 03:22:09,924] [pool-1-thread-7] Used files list does not include base file [testng] 05:30:30,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:30:30,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:30:30,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-03_05-30-30.log] [testng] 05:30:30,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d834d38 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 169 minutes 14 seconds Finished: SUCCESS