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Started by upstream project "BIOFORMATS-test-repo" build number 208 originally caused by: Started by upstream project "Trigger" build number 234 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins4319032715713641670.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33033_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:49:14,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:49:14,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:49:14,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:49:14,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:49:14,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:49:14,827 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:49:14,827 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:49:14,827 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:49:14,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:49:14,828 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:49:14,828 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:49:14,829 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:49:14,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:49:14,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:49:15,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:49:15,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:49:15,029 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:49:15,029 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:49:15,029 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:49:15,030 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:49:15,030 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:49:15,031 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:49:15,031 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-03 02:49:15,040] [main] java.version = 21 [testng] 02:49:15,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:49:15,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:15,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-03_02-49-15.log] [testng] 02:49:15,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-10-03 02:49:15,092] [main] testng.directory = /data [testng] [2024-10-03 02:49:15,092] [main] testng.configDirectory = /config [testng] [2024-10-03 02:49:15,102] [main] testng.multiplier = 1.0 [testng] [2024-10-03 02:49:15,102] [main] testng.in-memory = false [testng] [2024-10-03 02:49:15,102] [main] testng.allow-missing = false [testng] [2024-10-03 02:49:15,102] [main] user.language = en [testng] [2024-10-03 02:49:15,102] [main] user.country = ${user.country} [testng] [2024-10-03 02:49:15,103] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-03 02:52:47,510] [main] ---------------------------------------- [testng] [2024-10-03 02:52:47,510] [main] Total files: 268 [testng] [2024-10-03 02:52:47,510] [main] Scan time: 212.407 s (792 ms/file) [testng] [2024-10-03 02:52:47,511] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-03 02:56:53,070] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] 02:56:53,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:56:53,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:53,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-03_02-56-53.log] [testng] 02:56:53,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a0aa76 - End of configuration. [testng] [2024-10-03 02:56:53,733] [pool-1-thread-12] Initializing /data/steve/TIFF/Little owl TIFF: [testng] 02:56:53,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:56:53,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:53,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-03_02-56-53.log] [testng] 02:56:53,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9377aed - End of configuration. [testng] [2024-10-03 02:56:55,367] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] 02:56:55,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:56:55,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:55,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-03_02-56-55.log] [testng] 02:56:55,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@372fed98 - End of configuration. [testng] [2024-10-03 02:56:55,840] [pool-1-thread-10] Initializing /data/steve/Targa/Test.TGA: [testng] 02:56:55,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:56:55,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:55,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-03_02-56-55.log] [testng] 02:56:55,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3023403d - End of configuration. [testng] [2024-10-03 02:56:56,237] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] 02:56:56,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:56:56,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:56,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-03_02-56-56.log] [testng] 02:56:56,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58d247c0 - End of configuration. [testng] [2024-10-03 02:56:56,714] [pool-1-thread-8] Initializing /data/steve/TIFF/HAFF SEM: [testng] 02:56:56,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:56:56,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:56,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-03_02-56-56.log] [testng] 02:56:56,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa3ea57 - End of configuration. [testng] [2024-10-03 02:56:58,465] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] 02:56:58,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:56:58,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:58,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-03_02-56-58.log] [testng] 02:56:58,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5261684c - End of configuration. [testng] [2024-10-03 02:57:00,181] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] 02:57:00,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:57:00,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:57:00,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-03_02-57-00.log] [testng] 02:57:00,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12f0114f - End of configuration. [testng] [2024-10-03 02:57:00,702] [pool-1-thread-5] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] 02:57:00,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:57:00,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:57:00,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-03_02-57-00.log] [testng] 02:57:00,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11f4514a - End of configuration. [testng] [2024-10-03 02:57:02,331] [pool-1-thread-4] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] 02:57:02,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:57:02,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:57:02,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-03_02-57-02.log] [testng] 02:57:02,332 |-INFO in ch.qos.logback.core.sift.SiftProcessor@424f5b19 - End of configuration. [testng] [2024-10-03 02:57:03,069] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] 02:57:03,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:57:03,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:57:03,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-03_02-57-03.log] [testng] 02:57:03,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@486a504b - End of configuration. [testng] [2024-10-03 02:57:04,708] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] 02:57:04,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:57:04,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:57:04,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-03_02-57-04.log] [testng] 02:57:04,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12aadae0 - End of configuration. [testng] [2024-10-03 02:57:09,565] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits: [testng] [2024-10-03 02:57:09,739] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-10-03 02:57:10,005] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-10-03 02:57:10,780] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-10-03 02:57:11,304] [pool-1-thread-10] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-10-03 02:57:12,654] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-10-03 02:57:14,545] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-10-03 02:57:15,480] [pool-1-thread-6] Initializing /data/steve/FITS/M51.fits: [testng] [2024-10-03 02:57:16,255] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-10-03 02:57:16,944] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-10-03 02:57:17,543] [pool-1-thread-11] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-10-03 02:57:18,012] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-10-03 02:57:18,677] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-10-03 02:57:19,310] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-10-03 02:57:19,613] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-10-03 02:57:21,022] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-10-03 02:57:21,498] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-10-03 02:57:22,319] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-10-03 02:57:23,815] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-10-03 02:57:24,724] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-10-03 02:57:25,615] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-10-03 02:57:25,931] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-10-03 02:57:26,374] [pool-1-thread-1] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-10-03 02:57:27,862] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-10-03 02:57:28,312] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-10-03 02:57:29,169] [pool-1-thread-10] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-10-03 02:57:30,866] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-10-03 02:57:32,646] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-10-03 02:57:33,771] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-10-03 02:57:34,724] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-10-03 02:57:35,574] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-10-03 02:57:36,113] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-10-03 02:57:36,310] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-10-03 02:57:36,823] [pool-1-thread-9] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-10-03 02:57:38,606] [pool-1-thread-2] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-10-03 02:57:39,427] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-10-03 02:57:42,391] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-10-03 02:57:43,762] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-10-03 02:57:45,077] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-10-03 02:57:45,660] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-10-03 02:57:45,942] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-10-03 02:57:46,597] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-10-03 02:57:48,315] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-10-03 02:57:51,088] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-10-03 02:57:51,767] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-10-03 02:57:53,561] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-10-03 02:57:54,321] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-10-03 02:57:54,968] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-10-03 02:57:55,509] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-10-03 02:57:56,030] [pool-1-thread-4] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-10-03 02:57:56,682] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-10-03 02:57:59,683] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-10-03 02:58:00,843] [pool-1-thread-3] Initializing /data/steve/FITS/M13.fits: [testng] [2024-10-03 02:58:01,496] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-10-03 02:58:03,160] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-10-03 02:58:04,576] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-10-03 02:58:06,508] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-10-03 02:58:07,339] [pool-1-thread-10] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-10-03 02:58:07,851] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-10-03 02:58:08,239] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-10-03 02:58:10,067] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-10-03 02:58:10,702] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-10-03 02:58:12,223] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-10-03 02:58:13,012] [pool-1-thread-1] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-10-03 02:58:13,478] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-10-03 02:58:15,268] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-10-03 02:58:15,822] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-10-03 02:58:16,343] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-10-03 02:58:16,898] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-10-03 02:58:17,419] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-10-03 02:58:17,991] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-10-03 02:58:19,689] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-10-03 02:58:21,304] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-10-03 02:58:21,863] [pool-1-thread-9] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-10-03 02:58:23,460] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-10-03 02:58:24,023] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-10-03 02:58:25,290] [pool-1-thread-2] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-10-03 02:58:26,083] [pool-1-thread-3] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-10-03 02:58:26,875] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-10-03 02:58:27,210] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-10-03 02:58:28,812] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-10-03 02:58:29,269] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-10-03 02:58:29,789] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-10-03 02:58:31,663] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-10-03 02:58:33,958] [pool-1-thread-11] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-10-03 02:58:35,651] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-10-03 02:58:37,415] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-10-03 02:58:38,475] [pool-1-thread-9] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-10-03 02:58:38,675] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-10-03 02:58:39,283] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-10-03 02:58:41,196] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-10-03 02:58:41,743] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-10-03 02:58:43,390] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-10-03 02:58:44,576] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-10-03 02:58:46,376] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-10-03 02:58:47,387] [pool-1-thread-1] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-10-03 02:58:48,249] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-10-03 02:58:49,175] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-10-03 02:58:50,934] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-10-03 02:58:51,895] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-10-03 02:58:52,182] [pool-1-thread-7] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-10-03 02:58:53,950] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-10-03 02:58:55,712] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-10-03 02:58:57,314] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-10-03 02:58:57,890] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-10-03 02:58:58,827] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-10-03 02:58:59,596] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-10-03 02:59:00,800] [pool-1-thread-11] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-10-03 02:59:03,150] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-10-03 02:59:04,955] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-10-03 02:59:05,816] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-10-03 02:59:07,405] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-10-03 02:59:07,927] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-10-03 02:59:09,925] [pool-1-thread-1] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-10-03 02:59:10,462] [pool-1-thread-2] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-10-03 02:59:10,613] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-10-03 02:59:12,316] [pool-1-thread-7] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-10-03 02:59:14,009] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-10-03 02:59:14,732] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-10-03 02:59:15,305] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-10-03 02:59:16,485] [pool-1-thread-2] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-10-03 02:59:17,767] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-10-03 02:59:18,368] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-10-03 02:59:19,182] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-10-03 02:59:20,088] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-10-03 02:59:21,965] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-10-03 02:59:23,041] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-10-03 02:59:24,730] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-10-03 02:59:25,493] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-10-03 02:59:26,196] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-10-03 02:59:26,578] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-10-03 02:59:29,419] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-10-03 02:59:29,895] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-10-03 02:59:30,262] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-10-03 02:59:30,797] [pool-1-thread-11] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-10-03 02:59:31,723] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-10-03 02:59:33,332] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-10-03 02:59:33,725] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-10-03 02:59:35,829] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-10-03 02:59:36,533] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-10-03 02:59:37,030] [pool-1-thread-1] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-10-03 02:59:38,884] [pool-1-thread-11] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-10-03 02:59:40,879] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-10-03 02:59:41,344] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-10-03 02:59:42,795] [pool-1-thread-10] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-10-03 02:59:44,453] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-10-03 02:59:44,859] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-10-03 02:59:45,284] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 minutes 41 seconds Finished: SUCCESS