Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 208
originally caused by:
 Started by upstream project "Trigger" build number 234
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins4678115678834806305.sh
+ '[' leo = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33062_merge_ci -v /uod/idr/repos/curated/leo:/data -v /uod/idr-scratch/merge-ci/curated/leo:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
    [javac] 4 warnings

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:55:58,290 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 03:55:58,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
   [testng] 03:55:58,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:55:58,293 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:55:58,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:55:58,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:55:58,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:55:58,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:55:58,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:55:58,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:55:58,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:55:58,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:55:58,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:55:58,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:55:58,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:55:58,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:55:58,480 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:55:58,481 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:55:58,481 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:55:58,481 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:55:58,481 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
   [testng] 03:55:58,482 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
   [testng] 03:55:58,482 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-03 03:55:58,491] [main] java.version = 21
   [testng] 03:55:58,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:55:58,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:55:58,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-03_03-55-58.log]
   [testng] 03:55:58,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
   [testng] [2024-10-03 03:55:58,537] [main] testng.directory = /data
   [testng] [2024-10-03 03:55:58,537] [main] testng.configDirectory = /config
   [testng] [2024-10-03 03:55:58,545] [main] testng.multiplier = 1.0
   [testng] [2024-10-03 03:55:58,546] [main] testng.in-memory = false
   [testng] [2024-10-03 03:55:58,546] [main] testng.allow-missing = false
   [testng] [2024-10-03 03:55:58,546] [main] user.language = en
   [testng] [2024-10-03 03:55:58,546] [main] user.country = ${user.country}
   [testng] [2024-10-03 03:55:58,546] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-03 03:56:00,108] [main] ----------------------------------------
   [testng] [2024-10-03 03:56:00,108] [main] Total files: 10
   [testng] [2024-10-03 03:56:00,108] [main] Scan time: 1.562 s (156 ms/file)
   [testng] [2024-10-03 03:56:00,108] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 9 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-03 03:56:03,422] [pool-1-thread-1] Initializing /data/public/dmankus/2160grating 1024.tif: 
   [testng] 03:56:03,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:56:03,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:03,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-03_03-56-03.log]
   [testng] 03:56:03,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11b10a9c - End of configuration.
   [testng] [2024-10-03 03:56:03,698] [pool-1-thread-9] Initializing /data/qa-27408/Glc-1P+Cellob+CDP_72 h -04.tif: 
   [testng] 03:56:03,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:56:03,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:03,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-03_03-56-03.log]
   [testng] 03:56:03,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4057a61f - End of configuration.
   [testng] [2024-10-03 03:56:03,984] [pool-1-thread-8] Initializing /data/public/dmankus/2160grating 512.tif: 
   [testng] 03:56:03,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:56:03,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:03,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-03_03-56-03.log]
   [testng] 03:56:03,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c5e1c51 - End of configuration.
   [testng] [2024-10-03 03:56:04,246] [pool-1-thread-7] Initializing /data/public/dmankus/2160grating 3072.tif: 
   [testng] 03:56:04,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:56:04,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:04,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-03_03-56-04.log]
   [testng] 03:56:04,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dde17da - End of configuration.
   [testng] [2024-10-03 03:56:04,529] [pool-1-thread-6] Initializing /data/steve/Ewald B/LEO435_SEM.TIF: 
   [testng] 03:56:04,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:56:04,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:04,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-03_03-56-04.log]
   [testng] 03:56:04,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104609de - End of configuration.
   [testng] [2024-10-03 03:56:04,801] [pool-1-thread-5] Initializing /data/pablo/sample.tif: 
   [testng] 03:56:04,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:56:04,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:04,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-03_03-56-04.log]
   [testng] 03:56:04,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6cd913 - End of configuration.
   [testng] [2024-10-03 03:56:05,076] [pool-1-thread-4] Initializing /data/misc/issue_image.tif: 
   [testng] 03:56:05,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:56:05,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:05,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-03_03-56-05.log]
   [testng] 03:56:05,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@758ead1 - End of configuration.
   [testng] [2024-10-03 03:56:05,328] [pool-1-thread-3] Initializing /data/qa-16912/Zeiss_supra_SEM.tif: 
   [testng] 03:56:05,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:56:05,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:05,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-03_03-56-05.log]
   [testng] 03:56:05,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bc39050 - End of configuration.
   [testng] [2024-10-03 03:56:05,598] [pool-1-thread-2] Initializing /data/steve/Ewald B/MHUSV02.SXM: 
   [testng] 03:56:05,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:56:05,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:05,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-03_03-56-05.log]
   [testng] 03:56:05,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ba8dee0 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 477, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 16 seconds
Finished: SUCCESS