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Started by upstream project "BIOFORMATS-test-repo" build number 209 originally caused by: Started by upstream project "Trigger" build number 235 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins16090038257681885165.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33146_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:36:30,751 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:36:30,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:36:30,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:30,754 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:30,755 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:36:30,755 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:36:30,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:36:30,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:30,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:30,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:36:30,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:36:30,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:36:31,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:36:31,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:36:31,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:36:31,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:36:31,104 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:36:31,104 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:36:31,105 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:36:31,105 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:36:31,105 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:36:31,106 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:36:31,106 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 350 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-04 01:36:31,116] [main] java.version = 1.8.0_342 [testng] 01:36:31,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:36:31,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:31,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-04_01-36-31.log] [testng] 01:36:31,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-10-04 01:36:31,192] [main] testng.directory = /data [testng] [2024-10-04 01:36:31,192] [main] testng.configDirectory = /config [testng] [2024-10-04 01:36:31,210] [main] testng.multiplier = 1.0 [testng] [2024-10-04 01:36:31,211] [main] testng.in-memory = false [testng] [2024-10-04 01:36:31,211] [main] testng.allow-missing = false [testng] [2024-10-04 01:36:31,211] [main] user.language = en [testng] [2024-10-04 01:36:31,211] [main] user.country = ${user.country} [testng] [2024-10-04 01:36:31,211] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-04 01:36:31,728] [main] ---------------------------------------- [testng] [2024-10-04 01:36:31,728] [main] Total files: 21 [testng] [2024-10-04 01:36:31,728] [main] Scan time: 0.516 s (24 ms/file) [testng] [2024-10-04 01:36:31,728] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-04 01:36:35,965] [pool-1-thread-1] Initializing /data/samples/CTC24.TGA: [testng] 01:36:35,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:36:35,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:35,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-04_01-36-35.log] [testng] 01:36:35,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11d7f6b7 - End of configuration. [testng] [2024-10-04 01:36:36,119] [pool-1-thread-12] Initializing /data/samples/CTC16.TGA: [testng] 01:36:36,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:36:36,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:36,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-04_01-36-36.log] [testng] 01:36:36,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a30d2fe - End of configuration. [testng] [2024-10-04 01:36:36,320] [pool-1-thread-11] Initializing /data/samples/UTC16.TGA: [testng] 01:36:36,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:36:36,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:36,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-04_01-36-36.log] [testng] 01:36:36,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1533c59f - End of configuration. [testng] [2024-10-04 01:36:36,451] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 01:36:36,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:36:36,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:36,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-04_01-36-36.log] [testng] 01:36:36,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cce0d99 - End of configuration. [testng] [2024-10-04 01:36:36,577] [pool-1-thread-9] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:36:36,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:36:36,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:36,577 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-04_01-36-36.log] [testng] 01:36:36,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e91038d - End of configuration. [testng] [2024-10-04 01:36:36,770] [pool-1-thread-8] Initializing /data/samples/FLAG_T32.TGA: [testng] 01:36:36,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:36:36,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:36,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-04_01-36-36.log] [testng] 01:36:36,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@762b378b - End of configuration. [testng] [2024-10-04 01:36:36,885] [pool-1-thread-7] Initializing /data/samples/CCM8.TGA: [testng] 01:36:36,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:36:36,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:36,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-04_01-36-36.log] [testng] 01:36:36,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27e8b4e1 - End of configuration. [testng] [2024-10-04 01:36:37,042] [pool-1-thread-6] Initializing /data/samples/UBW8.TGA: [testng] 01:36:37,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:36:37,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:37,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-04_01-36-37.log] [testng] 01:36:37,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@620644a8 - End of configuration. [testng] [2024-10-04 01:36:37,141] [pool-1-thread-5] Initializing /data/samples/XING_T24.TGA: [testng] 01:36:37,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:36:37,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:37,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-04_01-36-37.log] [testng] 01:36:37,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25c92fa2 - End of configuration. [testng] [2024-10-04 01:36:37,323] [pool-1-thread-4] Initializing /data/samples/XING_T32.TGA: [testng] 01:36:37,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:36:37,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:37,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-04_01-36-37.log] [testng] 01:36:37,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eae0383 - End of configuration. [testng] [2024-10-04 01:36:37,594] [pool-1-thread-3] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:36:37,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:36:37,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:37,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-04_01-36-37.log] [testng] 01:36:37,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d20114 - End of configuration. [testng] [2024-10-04 01:36:37,829] [pool-1-thread-2] Initializing /data/samples/UCM8.TGA: [testng] 01:36:37,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:36:37,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:37,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-04_01-36-37.log] [testng] 01:36:37,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20812d52 - End of configuration. [testng] [2024-10-04 01:36:40,777] [pool-1-thread-6] Initializing /data/samples/FLAG_B32.TGA: [testng] [2024-10-04 01:36:40,910] [pool-1-thread-3] Initializing /data/samples/CBW8.TGA: [testng] [2024-10-04 01:36:41,082] [pool-1-thread-11] Initializing /data/samples/XING_B32.TGA: [testng] [2024-10-04 01:36:41,271] [pool-1-thread-8] Initializing /data/samples/XING_B24.TGA: [testng] [2024-10-04 01:36:41,410] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA: [testng] [2024-10-04 01:36:41,499] [pool-1-thread-12] Initializing /data/samples/UTC24.TGA: [testng] [2024-10-04 01:36:41,601] [pool-1-thread-5] Initializing /data/samples/XING_B16.TGA: [testng] [2024-10-04 01:36:41,791] [pool-1-thread-4] Initializing /data/samples/MARBLES.TGA: [testng] [2024-10-04 01:36:41,952] [pool-1-thread-10] Initializing /data/samples/FLAG_B24.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 seconds Finished: SUCCESS