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Started by upstream project "BIOFORMATS-test-repo" build number 210 originally caused by: Started by upstream project "Trigger" build number 236 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins12234326377395957720.sh + '[' pict = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33323_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:46:48,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:46:48,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:46:48,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:46:48,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:46:48,543 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:46:48,543 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:46:48,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:46:48,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:46:48,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:46:48,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:46:48,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:46:48,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:46:48,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:46:48,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:46:48,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:46:48,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:46:48,769 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:46:48,769 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:46:48,769 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:46:48,770 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:46:48,770 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:46:48,771 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:46:48,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 227 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-05 01:46:48,784] [main] java.version = 11.0.16 [testng] 01:46:48,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:46:48,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:48,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-05_01-46-48.log] [testng] 01:46:48,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-10-05 01:46:48,841] [main] testng.directory = /data [testng] [2024-10-05 01:46:48,841] [main] testng.configDirectory = /config [testng] [2024-10-05 01:46:48,851] [main] testng.multiplier = 1.0 [testng] [2024-10-05 01:46:48,853] [main] testng.in-memory = false [testng] [2024-10-05 01:46:48,853] [main] testng.allow-missing = false [testng] [2024-10-05 01:46:48,853] [main] user.language = en [testng] [2024-10-05 01:46:48,853] [main] user.country = ${user.country} [testng] [2024-10-05 01:46:48,853] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-05 01:46:49,413] [main] ---------------------------------------- [testng] [2024-10-05 01:46:49,413] [main] Total files: 25 [testng] [2024-10-05 01:46:49,413] [main] Scan time: 0.56 s (22 ms/file) [testng] [2024-10-05 01:46:49,413] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-05 01:46:51,613] [pool-1-thread-1] Initializing /data/brian/images/WHT.PCT: [testng] 01:46:51,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:46:51,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:51,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-05_01-46-51.log] [testng] 01:46:51,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32781fdd - End of configuration. [testng] [2024-10-05 01:46:51,660] [pool-1-thread-12] Initializing /data/brian/images/GRN.PCT: [testng] 01:46:51,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:46:51,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:51,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-05_01-46-51.log] [testng] 01:46:51,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c669ba1 - End of configuration. [testng] [2024-10-05 01:46:51,706] [pool-1-thread-11] Initializing /data/jqd/mire32.pict: [testng] 01:46:51,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:46:51,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:51,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-05_01-46-51.log] [testng] 01:46:51,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7239624e - End of configuration. [testng] [2024-10-05 01:46:51,748] [pool-1-thread-10] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 01:46:51,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:46:51,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:51,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-05_01-46-51.log] [testng] 01:46:51,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@142833ef - End of configuration. [testng] [2024-10-05 01:46:51,782] [pool-1-thread-9] Initializing /data/misc/swlogo.pict: [testng] 01:46:51,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:46:51,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:51,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-05_01-46-51.log] [testng] 01:46:51,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@309bde45 - End of configuration. [testng] [2024-10-05 01:46:51,816] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] 01:46:51,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:46:51,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:51,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-05_01-46-51.log] [testng] 01:46:51,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f9b40ef - End of configuration. [testng] [2024-10-05 01:46:51,826] [pool-1-thread-7] Initializing /data/jqd/sixteenBit.pict: [testng] 01:46:51,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:46:51,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:51,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-05_01-46-51.log] [testng] 01:46:51,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35f8188a - End of configuration. [testng] [2024-10-05 01:46:51,869] [pool-1-thread-6] Initializing /data/misc/planet.pict: [testng] 01:46:51,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:46:51,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:51,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-05_01-46-51.log] [testng] 01:46:51,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40803d0c - End of configuration. [testng] [2024-10-05 01:46:51,928] [pool-1-thread-5] Initializing /data/jqd/32bit.pict: [testng] 01:46:51,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:46:51,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:51,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-05_01-46-51.log] [testng] 01:46:51,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bb8fc17 - End of configuration. [testng] [2024-10-05 01:46:51,981] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 01:46:51,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:46:51,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:51,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-05_01-46-51.log] [testng] 01:46:51,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@116edaea - End of configuration. [testng] [2024-10-05 01:46:52,025] [pool-1-thread-3] Initializing /data/brian/images/BLK.PCT: [testng] 01:46:52,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:46:52,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:52,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-05_01-46-52.log] [testng] 01:46:52,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f4ed8b3 - End of configuration. [testng] [2024-10-05 01:46:52,071] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:46:52,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:46:52,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:52,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-05_01-46-52.log] [testng] 01:46:52,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aa824ce - End of configuration. [testng] [2024-10-05 01:46:53,746] [pool-1-thread-10] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-10-05 01:46:53,804] [pool-1-thread-9] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-10-05 01:46:53,827] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-10-05 01:46:53,867] [pool-1-thread-8] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-10-05 01:46:54,160] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-10-05 01:46:54,377] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-10-05 01:46:54,403] [pool-1-thread-6] Initializing /data/brian/images/BLU.PCT: [testng] [2024-10-05 01:46:54,462] [pool-1-thread-12] Initializing /data/brian/images/RED.PCT: [testng] [2024-10-05 01:46:54,519] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-10-05 01:46:54,655] [pool-1-thread-5] Initializing /data/jqd/mireSixteen.pict: [testng] [2024-10-05 01:46:54,831] [pool-1-thread-2] Initializing /data/misc/planet2.pict: [testng] [2024-10-05 01:46:55,007] [pool-1-thread-4] Initializing /data/brian/images/VENUS.pct: [testng] [2024-10-05 01:46:55,457] [pool-1-thread-8] Initializing /data/brian/images/YEL.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS