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Started by upstream project "BIOFORMATS-test-repo" build number 26 originally caused by: Started by upstream project "Trigger" build number 29 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14435092497177489003.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_3337_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:57:26,751 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:57:26,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:57:26,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:57:26,754 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:57:26,754 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:57:26,754 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:57:26,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:57:26,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:57:26,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:57:26,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:57:26,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:57:26,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:57:26,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:57:26,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:57:26,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:57:26,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:57:26,942 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:57:26,942 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:57:26,942 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:57:26,942 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:57:26,943 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:57:26,943 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:57:26,943 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-07 01:57:26,952] [main] java.version = 17.0.2 [testng] 01:57:26,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:57:26,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:26,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-07_01-57-26.log] [testng] 01:57:26,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-04-07 01:57:26,998] [main] testng.directory = /data [testng] [2024-04-07 01:57:26,999] [main] testng.configDirectory = /config [testng] [2024-04-07 01:57:27,007] [main] testng.multiplier = 1.0 [testng] [2024-04-07 01:57:27,008] [main] testng.in-memory = false [testng] [2024-04-07 01:57:27,008] [main] testng.allow-missing = false [testng] [2024-04-07 01:57:27,008] [main] user.language = en [testng] [2024-04-07 01:57:27,008] [main] user.country = ${user.country} [testng] [2024-04-07 01:57:27,008] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-07 02:04:49,954] [main] ---------------------------------------- [testng] [2024-04-07 02:04:49,954] [main] Total files: 7329 [testng] [2024-04-07 02:04:49,954] [main] Scan time: 442.946 s (60 ms/file) [testng] [2024-04-07 02:04:49,954] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-07 02:08:22,372] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 02:08:22,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:08:22,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:22,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-07_02-08-22.log] [testng] 02:08:22,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67805f47 - End of configuration. [testng] [2024-04-07 02:08:22,493] [pool-1-thread-12] Initializing /data/qa-16915/m-04-488.tif: [testng] 02:08:22,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:08:22,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:22,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-07_02-08-22.log] [testng] 02:08:22,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59e4d03 - End of configuration. [testng] [2024-04-07 02:08:22,963] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] 02:08:22,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:08:22,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:22,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-07_02-08-22.log] [testng] 02:08:22,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3db611 - End of configuration. [testng] [2024-04-07 02:08:23,070] [pool-1-thread-11] Used files list does not include base file [testng] [2024-04-07 02:08:23,091] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] 02:08:23,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:08:23,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:23,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-07_02-08-23.log] [testng] 02:08:23,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132d8d0b - End of configuration. [testng] [2024-04-07 02:08:23,183] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 02:08:23,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:08:23,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:23,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-07_02-08-23.log] [testng] 02:08:23,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33fe01bc - End of configuration. [testng] [2024-04-07 02:08:23,293] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] 02:08:23,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:08:23,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:23,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-07_02-08-23.log] [testng] 02:08:23,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d1ead8 - End of configuration. [testng] [2024-04-07 02:08:23,370] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] 02:08:23,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:08:23,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:23,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-07_02-08-23.log] [testng] 02:08:23,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b9128c - End of configuration. [testng] [2024-04-07 02:08:23,448] [pool-1-thread-7] Used files list does not include base file [testng] [2024-04-07 02:08:23,451] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] 02:08:23,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:08:23,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:23,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-07_02-08-23.log] [testng] 02:08:23,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c855115 - End of configuration. [testng] [2024-04-07 02:08:23,556] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 02:08:23,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:08:23,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:23,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-07_02-08-23.log] [testng] 02:08:23,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d4a06d0 - End of configuration. [testng] [2024-04-07 02:08:23,663] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] 02:08:23,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:08:23,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:23,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-07_02-08-23.log] [testng] 02:08:23,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f7b1d3 - End of configuration. [testng] [2024-04-07 02:08:23,709] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] 02:08:23,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:08:23,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:23,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-07_02-08-23.log] [testng] 02:08:23,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189924ac - End of configuration. [testng] [2024-04-07 02:08:24,678] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] 02:08:24,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:08:24,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:24,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-07_02-08-24.log] [testng] 02:08:24,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67ce35b0 - End of configuration. [testng] [2024-04-07 02:08:27,161] [pool-1-thread-5] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-04-07 02:08:28,166] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-04-07 02:08:28,657] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-04-07 02:08:28,773] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-04-07 02:08:28,830] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-04-07 02:08:29,136] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-04-07 02:08:29,298] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-07 02:08:29,427] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-04-07 02:08:30,072] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-04-07 02:08:30,832] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-04-07 02:08:30,933] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-07 02:08:30,957] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-07 02:08:31,038] [pool-1-thread-9] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-04-07 02:08:31,140] [pool-1-thread-11] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-04-07 02:08:31,302] [pool-1-thread-7] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-04-07 02:08:32,257] [pool-1-thread-5] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-04-07 02:08:32,789] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-04-07 02:08:33,382] [pool-1-thread-12] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-04-07 02:08:34,137] [pool-1-thread-4] Initializing /data/ascb/mt aim.tif: [testng] [2024-04-07 02:08:34,301] [pool-1-thread-8] Initializing /data/qa-16887/m-01.tif: [testng] [2024-04-07 02:08:34,686] [pool-1-thread-11] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-04-07 02:08:34,759] [pool-1-thread-9] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-04-07 02:08:34,894] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-07 02:08:34,927] [pool-1-thread-3] Used files list does not include base file [testng] [2024-04-07 02:08:35,512] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-04-07 02:08:35,670] [pool-1-thread-3] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-04-07 02:08:36,591] [pool-1-thread-1] Initializing /data/josh/2101to800.stk: [testng] [2024-04-07 02:08:37,375] [pool-1-thread-4] Initializing /data/samples/zserEight.stk: [testng] [2024-04-07 02:08:37,646] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-04-07 02:08:38,660] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-07 02:08:38,858] [pool-1-thread-11] Initializing /data/samples/zserSixteen.stk: [testng] [2024-04-07 02:08:39,322] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-07 02:08:39,439] [pool-1-thread-11] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-04-07 02:08:39,477] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-04-07 02:08:39,541] [pool-1-thread-12] Initializing /data/ascb/golgi marker.tif: [testng] [2024-04-07 02:08:40,025] [pool-1-thread-6] Initializing /data/jae/RGB_s34.tif: [testng] [2024-04-07 02:08:40,164] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-07 02:08:40,364] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-04-07 02:08:41,141] [pool-1-thread-12] Initializing /data/josh/2101to400astk.stk: [testng] [2024-04-07 02:08:43,135] [pool-1-thread-7] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-04-07 02:08:43,334] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-04-07 02:08:43,456] [pool-1-thread-4] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-04-07 02:08:44,025] [pool-1-thread-1] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-04-07 02:08:45,683] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-04-07 02:08:45,810] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-07 02:08:45,993] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-04-07 02:08:46,463] [pool-1-thread-8] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-04-07 02:08:46,746] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-07 02:08:46,786] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-07 02:08:46,787] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-04-07 02:08:46,863] [pool-1-thread-2] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-04-07 02:08:46,923] [pool-1-thread-7] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-04-07 02:08:47,695] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-04-07 02:08:47,782] [pool-1-thread-7] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-04-07 02:08:58,078] [pool-1-thread-2] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-04-07 02:08:58,280] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-04-07 02:08:58,400] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-07 02:08:58,669] [pool-1-thread-5] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-04-07 02:08:59,022] [pool-1-thread-6] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-04-07 02:09:00,318] [pool-1-thread-10] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-04-07 02:09:01,210] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-04-07 02:09:01,574] [pool-1-thread-11] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-04-07 02:09:02,068] [pool-1-thread-10] Initializing /data/qa-16915/m-01.tif: [testng] [2024-04-07 02:09:03,366] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-04-07 02:09:03,453] [pool-1-thread-5] Initializing /data/steve/Experiment2.stk: [testng] [2024-04-07 02:09:04,008] [pool-1-thread-11] Initializing /data/steve/Experiment2.tif: [testng] [2024-04-07 02:09:04,330] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-04-07 02:09:04,792] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-04-07 02:09:04,870] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-07 02:09:04,960] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-04-07 02:09:05,377] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-04-07 02:09:05,411] [pool-1-thread-11] Used files list does not include base file [testng] [2024-04-07 02:09:05,776] [pool-1-thread-10] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-04-07 02:09:05,833] [pool-1-thread-9] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-04-07 02:09:06,125] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-04-07 02:09:08,214] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-04-07 02:09:08,258] [pool-1-thread-6] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-04-07 02:09:08,380] [pool-1-thread-11] Initializing 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Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-04-07 02:09:12,691] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-04-07 02:09:12,743] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-07 02:09:12,803] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-04-07 02:09:12,873] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-07 02:09:12,894] [pool-1-thread-9] Used files list does not include base file [testng] [2024-04-07 02:09:12,935] [pool-1-thread-6] Initializing /data/samples/zser24.stk: [testng] [2024-04-07 02:09:13,360] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-04-07 02:09:13,435] [pool-1-thread-6] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-04-07 02:09:13,847] [pool-1-thread-9] Initializing /data/samples/diatoms3d.stk: [testng] [2024-04-07 02:09:13,970] [pool-1-thread-12] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-04-07 02:09:14,090] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-07 02:09:14,233] [pool-1-thread-2] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-04-07 02:09:14,443] [pool-1-thread-9] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-04-07 02:09:14,700] [pool-1-thread-1] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-04-07 02:09:16,084] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-07 02:09:16,149] [pool-1-thread-6] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-07 02:09:16,197] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-04-07 02:09:16,233] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-04-07 02:09:16,300] [pool-1-thread-11] Used files list does not include base file [testng] [2024-04-07 02:09:16,302] [pool-1-thread-12] Initializing /data/josh/2101to600f.stk: [testng] [2024-04-07 02:09:19,028] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-07 02:09:19,344] [pool-1-thread-1] Initializing /data/samples/10xcalib.tif: [testng] [2024-04-07 02:09:19,399] [pool-1-thread-2] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-04-07 02:09:19,546] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-04-07 02:09:19,621] [pool-1-thread-3] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-04-07 02:09:20,031] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-04-07 02:09:20,102] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-04-07 02:09:20,560] [pool-1-thread-1] Initializing /data/alex/Selected FITC.stk: [testng] [2024-04-07 02:09:20,794] [pool-1-thread-8] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-04-07 02:09:21,034] [pool-1-thread-2] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-04-07 02:09:21,204] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-07 02:09:21,290] [pool-1-thread-6] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-04-07 02:09:21,810] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-04-07 02:09:22,159] [pool-1-thread-1] Initializing /data/samples/zseries.stk: [testng] [2024-04-07 02:09:22,424] [pool-1-thread-8] Initializing 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/data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-04-07 02:09:36,676] [pool-1-thread-6] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-04-07 02:09:36,790] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-04-07 02:09:36,863] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-07 02:09:36,943] [pool-1-thread-1] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-04-07 02:09:38,012] [pool-1-thread-1] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-04-07 02:09:38,200] [pool-1-thread-8] Initializing /data/samples/10xcalib.stk: [testng] [2024-04-07 02:09:38,744] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-04-07 02:09:38,889] [pool-1-thread-8] Initializing 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Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-04-07 02:09:42,948] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-07 02:09:43,222] [pool-1-thread-2] Initializing /data/dave/Z Series.stk: [testng] [2024-04-07 02:09:43,939] [pool-1-thread-8] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-04-07 02:09:44,030] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-04-07 02:09:44,093] [pool-1-thread-2] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-04-07 02:09:44,190] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-07 02:09:44,335] [pool-1-thread-6] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-04-07 02:09:45,294] [pool-1-thread-11] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-04-07 02:09:45,712] [pool-1-thread-6] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-04-07 02:09:45,942] [pool-1-thread-8] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-04-07 02:09:46,454] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-04-07 02:09:46,541] [pool-1-thread-2] Used files list does not include base file [testng] [2024-04-07 02:09:46,555] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-04-07 02:09:46,777] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-04-07 02:09:46,956] [pool-1-thread-11] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-04-07 02:09:47,838] [pool-1-thread-1] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-04-07 02:09:48,457] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-04-07 02:09:48,941] [pool-1-thread-4] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-04-07 02:09:49,456] [pool-1-thread-12] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-04-07 02:09:50,267] [pool-1-thread-1] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-04-07 02:09:50,307] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-04-07 02:09:50,401] [pool-1-thread-2] Initializing /data/josh/2101to600b.stk: [testng] [2024-04-07 02:09:51,808] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-04-07 02:09:52,490] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-07 02:09:52,777] [pool-1-thread-3] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-04-07 02:09:53,029] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-04-07 02:09:53,503] [pool-1-thread-11] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-04-07 02:09:53,807] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-04-07 02:09:54,394] [pool-1-thread-4] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-04-07 02:09:54,649] [pool-1-thread-11] Initializing /data/grant/X.STK: [testng] [2024-04-07 02:09:55,318] [pool-1-thread-1] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-04-07 02:09:55,416] [pool-1-thread-8] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-04-07 02:09:55,488] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-04-07 02:09:55,515] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-04-07 02:09:55,564] [pool-1-thread-12] Used files list does not include base file [testng] [2024-04-07 02:09:56,053] [pool-1-thread-6] Initializing /data/thomas/test.tif: [testng] [2024-04-07 02:09:56,238] [pool-1-thread-8] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-04-07 02:09:56,803] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-04-07 02:09:57,028] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-07 02:09:57,242] [pool-1-thread-5] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-04-07 02:09:57,583] [pool-1-thread-8] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-04-07 02:09:57,917] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-07 02:09:58,128] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-04-07 02:09:58,333] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-07 02:09:58,430] [pool-1-thread-11] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-04-07 02:10:00,058] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-07 02:10:00,080] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-07 02:10:00,118] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-07 02:10:00,509] [pool-1-thread-5] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-04-07 02:10:00,582] [pool-1-thread-12] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-04-07 02:10:00,743] [pool-1-thread-6] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-04-07 02:10:00,938] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-04-07 02:10:01,014] [pool-1-thread-7] Used files list does not include base file [testng] [2024-04-07 02:10:01,169] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-07 02:10:01,410] [pool-1-thread-5] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-04-07 02:10:01,839] [pool-1-thread-1] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-04-07 02:10:02,962] [pool-1-thread-3] Initializing /data/cumol-test-series/23.001: [testng] [2024-04-07 02:10:03,034] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-04-07 02:10:03,491] [pool-1-thread-6] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-04-07 02:10:03,562] [pool-1-thread-9] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-04-07 02:10:04,319] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-04-07 02:10:04,391] [pool-1-thread-12] Initializing /data/jerome/deconv.STK: [testng] [2024-04-07 02:10:04,972] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-04-07 02:10:06,660] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-04-07 02:10:06,701] [pool-1-thread-2] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-04-07 02:10:23,679] [pool-1-thread-7] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 54 seconds Finished: SUCCESS