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Started by upstream project "BIOFORMATS-test-repo" build number 211
originally caused by:
 Started by upstream project "Trigger" build number 237
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins7692980803612743404.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33503_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 02:11:44,586 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:11:44,588 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 02:11:44,588 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:11:44,589 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:11:44,589 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:11:44,589 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:11:44,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:11:44,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:11:44,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:11:44,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:11:44,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:11:44,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:11:44,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:11:44,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:11:44,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:11:44,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:11:44,848 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:11:44,849 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:11:44,849 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:11:44,849 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:11:44,849 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 02:11:44,851 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 02:11:44,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-06 02:11:44,861] [main] java.version = 17.0.2
   [testng] 02:11:44,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:11:44,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:44,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-06_02-11-44.log]
   [testng] 02:11:44,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-10-06 02:11:44,932] [main] testng.directory = /data
   [testng] [2024-10-06 02:11:44,933] [main] testng.configDirectory = /config
   [testng] [2024-10-06 02:11:44,947] [main] testng.multiplier = 1.0
   [testng] [2024-10-06 02:11:44,948] [main] testng.in-memory = false
   [testng] [2024-10-06 02:11:44,948] [main] testng.allow-missing = false
   [testng] [2024-10-06 02:11:44,948] [main] user.language = en
   [testng] [2024-10-06 02:11:44,949] [main] user.country = ${user.country}
   [testng] [2024-10-06 02:11:44,949] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-06 02:11:51,270] [main] ----------------------------------------
   [testng] [2024-10-06 02:11:51,270] [main] Total files: 25
   [testng] [2024-10-06 02:11:51,270] [main] Scan time: 6.321 s (252 ms/file)
   [testng] [2024-10-06 02:11:51,270] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 18 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-06 02:11:56,833] [pool-1-thread-1] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: 
   [testng] 02:11:56,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:11:56,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:56,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-06_02-11-56.log]
   [testng] 02:11:56,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4898f78e - End of configuration.
   [testng] [2024-10-06 02:11:56,946] [pool-1-thread-12] Initializing /data/pang/DLMeD2E1_010500x03.dm2: 
   [testng] 02:11:56,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:11:56,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:56,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-06_02-11-56.log]
   [testng] 02:11:56,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b19f201 - End of configuration.
   [testng] [2024-10-06 02:11:57,079] [pool-1-thread-11] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: 
   [testng] 02:11:57,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:11:57,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:57,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-06_02-11-57.log]
   [testng] 02:11:57,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6254bb7 - End of configuration.
   [testng] [2024-10-06 02:11:57,098] [pool-1-thread-10] Initializing /data/imagic/TEM 10118.dm2: 
   [testng] 02:11:57,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:11:57,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:57,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-06_02-11-57.log]
   [testng] 02:11:57,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e1d3580 - End of configuration.
   [testng] [2024-10-06 02:11:57,180] [pool-1-thread-9] Initializing /data/pang/unproc-auto: 
   [testng] 02:11:57,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:11:57,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:57,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-06_02-11-57.log]
   [testng] 02:11:57,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a9975e7 - End of configuration.
   [testng] [2024-10-06 02:11:57,300] [pool-1-thread-8] Initializing /data/pang/grating025k.dm2: 
   [testng] 02:11:57,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:11:57,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:57,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-06_02-11-57.log]
   [testng] 02:11:57,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31b0fa79 - End of configuration.
   [testng] [2024-10-06 02:11:57,368] [pool-1-thread-7] Initializing /data/pang/signed: 
   [testng] 02:11:57,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:11:57,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:57,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-06_02-11-57.log]
   [testng] 02:11:57,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74e2ac77 - End of configuration.
   [testng] [2024-10-06 02:11:57,440] [pool-1-thread-6] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: 
   [testng] 02:11:57,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:11:57,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:57,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-06_02-11-57.log]
   [testng] 02:11:57,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77863339 - End of configuration.
   [testng] [2024-10-06 02:11:57,549] [pool-1-thread-5] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: 
   [testng] 02:11:57,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:11:57,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:57,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-06_02-11-57.log]
   [testng] 02:11:57,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63156615 - End of configuration.
   [testng] [2024-10-06 02:11:57,563] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: 
   [testng] 02:11:57,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:11:57,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:57,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-06_02-11-57.log]
   [testng] 02:11:57,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75bdbd1b - End of configuration.
   [testng] [2024-10-06 02:11:57,579] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Zucchini.dm2: 
   [testng] 02:11:57,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:11:57,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:57,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-06_02-11-57.log]
   [testng] 02:11:57,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ebbb5f8 - End of configuration.
   [testng] [2024-10-06 02:11:57,653] [pool-1-thread-2] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: 
   [testng] 02:11:57,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:11:57,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:57,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-06_02-11-57.log]
   [testng] 02:11:57,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3de25fa - End of configuration.
   [testng] [2024-10-06 02:12:00,004] [pool-1-thread-5] Initializing /data/imagic/1-1.dm2: 
   [testng] [2024-10-06 02:12:00,078] [pool-1-thread-8] Initializing /data/imagic/not read correctly/Zucchini_preview.png: 
   [testng] [2024-10-06 02:12:00,094] [pool-1-thread-9] Initializing /data/imagic/13008.dm2: 
   [testng] [2024-10-06 02:12:00,184] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: 
   [testng] [2024-10-06 02:12:00,201] [pool-1-thread-7] Initializing /data/pang/10500x-o4: 
   [testng] [2024-10-06 02:12:00,288] [pool-1-thread-6] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 954, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 21 seconds
Finished: SUCCESS