Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 211
originally caused by:
 Started by upstream project "Trigger" build number 237
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins11799082012784599211.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33508_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 02:19:03,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:19:03,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:19:03,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:19:03,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:19:03,669 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:19:03,669 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:19:03,670 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:19:03,670 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:19:03,670 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration.
   [testng] 02:19:03,679 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point
   [testng] 02:19:03,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 408 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-06 02:19:03,689] [main] java.version = 17.0.2
   [testng] 02:19:03,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:19:03,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:03,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-06_02-19-03.log]
   [testng] 02:19:03,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-10-06 02:19:03,894] [main] testng.directory = /data
   [testng] [2024-10-06 02:19:03,894] [main] testng.configDirectory = /config
   [testng] [2024-10-06 02:19:03,998] [main] testng.multiplier = 1.0
   [testng] [2024-10-06 02:19:03,999] [main] testng.in-memory = false
   [testng] [2024-10-06 02:19:04,000] [main] testng.allow-missing = false
   [testng] [2024-10-06 02:19:04,000] [main] user.language = en
   [testng] [2024-10-06 02:19:04,000] [main] user.country = ${user.country}
   [testng] [2024-10-06 02:19:04,000] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-06 02:19:04,786] [main] ----------------------------------------
   [testng] [2024-10-06 02:19:04,786] [main] Total files: 15
   [testng] [2024-10-06 02:19:04,786] [main] Scan time: 0.786 s (52 ms/file)
   [testng] [2024-10-06 02:19:04,786] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-06 02:19:15,630] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: 
   [testng] 02:19:15,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:19:15,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:15,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-06_02-19-15.log]
   [testng] 02:19:15,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43653b9 - End of configuration.
   [testng] [2024-10-06 02:19:15,938] [pool-1-thread-12] Initializing /data/daren/test_32bit_float.mnc: 
   [testng] 02:19:15,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:19:15,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:15,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-06_02-19-15.log]
   [testng] 02:19:15,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4192137f - End of configuration.
   [testng] [2024-10-06 02:19:16,658] [pool-1-thread-11] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc: 
   [testng] 02:19:16,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:19:16,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:16,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-06_02-19-16.log]
   [testng] 02:19:16,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aae8575 - End of configuration.
   [testng] [2024-10-06 02:19:16,949] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc: 
   [testng] 02:19:16,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:19:16,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:16,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-06_02-19-16.log]
   [testng] 02:19:16,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aec3c23 - End of configuration.
   [testng] [2024-10-06 02:19:17,364] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: 
   [testng] 02:19:17,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:19:17,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:17,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-06_02-19-17.log]
   [testng] 02:19:17,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36d0c992 - End of configuration.
   [testng] [2024-10-06 02:19:17,555] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: 
   [testng] 02:19:17,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:19:17,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:17,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-06_02-19-17.log]
   [testng] 02:19:17,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59926fe3 - End of configuration.
   [testng] [2024-10-06 02:19:17,791] [pool-1-thread-7] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: 
   [testng] 02:19:17,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:19:17,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:17,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-06_02-19-17.log]
   [testng] 02:19:17,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2053e1a8 - End of configuration.
   [testng] [2024-10-06 02:19:18,093] [pool-1-thread-6] Initializing /data/qa-17215/IBSR01.mnc: 
   [testng] 02:19:18,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:19:18,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:18,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-06_02-19-18.log]
   [testng] 02:19:18,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27e15a66 - End of configuration.
   [testng] [2024-10-06 02:19:18,440] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_atlas_cerebellum_avg_53_mask_1mm.mnc: 
   [testng] 02:19:18,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:19:18,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:18,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-06_02-19-18.log]
   [testng] 02:19:18,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40e31214 - End of configuration.
   [testng] [2024-10-06 02:19:19,024] [pool-1-thread-4] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc: 
   [testng] 02:19:19,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:19:19,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:19,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-06_02-19-19.log]
   [testng] 02:19:19,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@719bde66 - End of configuration.
   [testng] [2024-10-06 02:19:19,245] [pool-1-thread-3] Initializing /data/bigbrain/pm6479o.mnc: 
   [testng] 02:19:19,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:19:19,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:19,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-06_02-19-19.log]
   [testng] 02:19:19,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f82270 - End of configuration.
   [testng] [2024-10-06 02:19:19,989] [pool-1-thread-2] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc: 
   [testng] 02:19:19,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:19:19,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:19,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-06_02-19-19.log]
   [testng] 02:19:19,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d33b420 - End of configuration.

BUILD SUCCESSFUL
Total time: 43 seconds
Finished: SUCCESS