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Started by upstream project "BIOFORMATS-test-repo" build number 3 originally caused by: Started by upstream project "Trigger" build number 4 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins14520181567589600643.sh + '[' targa = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_336_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:30:23,438 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:30:23,441 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 00:30:23,441 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:23,444 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:23,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:30:23,446 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:30:23,447 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:30:23,447 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:23,448 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:23,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:30:23,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:30:23,451 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:30:23,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:30:23,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:30:23,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:30:23,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:30:23,785 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:30:23,786 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:30:23,786 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:30:23,787 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:30:23,787 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 00:30:23,788 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 00:30:23,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 340 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-16 00:30:23,802] [main] java.version = 11.0.16 [testng] 00:30:23,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:30:23,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:23,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-16_00-30-23.log] [testng] 00:30:23,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-03-16 00:30:23,876] [main] testng.directory = /data [testng] [2024-03-16 00:30:23,876] [main] testng.configDirectory = /config [testng] [2024-03-16 00:30:23,897] [main] testng.multiplier = 1.0 [testng] [2024-03-16 00:30:23,899] [main] testng.in-memory = false [testng] [2024-03-16 00:30:23,899] [main] testng.allow-missing = false [testng] [2024-03-16 00:30:23,899] [main] user.language = en [testng] [2024-03-16 00:30:23,899] [main] user.country = ${user.country} [testng] [2024-03-16 00:30:23,899] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-16 00:30:24,500] [main] ---------------------------------------- [testng] [2024-03-16 00:30:24,500] [main] Total files: 21 [testng] [2024-03-16 00:30:24,501] [main] Scan time: 0.601 s (28 ms/file) [testng] [2024-03-16 00:30:24,501] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-16 00:30:28,155] [pool-1-thread-1] Initializing /data/samples/XING_B32.TGA: [testng] 00:30:28,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:30:28,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:28,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-16_00-30-28.log] [testng] 00:30:28,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f631efe - End of configuration. [testng] [2024-03-16 00:30:28,449] [pool-1-thread-12] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:30:28,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:30:28,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:28,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-16_00-30-28.log] [testng] 00:30:28,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c080ba9 - End of configuration. [testng] [2024-03-16 00:30:28,751] [pool-1-thread-11] Initializing /data/samples/XING_T32.TGA: [testng] 00:30:28,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:30:28,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:28,756 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-16_00-30-28.log] [testng] 00:30:28,757 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12d263e - End of configuration. [testng] [2024-03-16 00:30:28,951] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 00:30:28,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:30:28,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:28,952 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-16_00-30-28.log] [testng] 00:30:28,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d997043 - End of configuration. [testng] [2024-03-16 00:30:29,126] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:30:29,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:30:29,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:29,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-16_00-30-29.log] [testng] 00:30:29,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289092e - End of configuration. [testng] [2024-03-16 00:30:29,300] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:30:29,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:30:29,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:29,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-16_00-30-29.log] [testng] 00:30:29,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57c2aff5 - End of configuration. [testng] [2024-03-16 00:30:29,361] [pool-1-thread-7] Initializing /data/samples/UTC16.TGA: [testng] 00:30:29,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:30:29,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:29,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-16_00-30-29.log] [testng] 00:30:29,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22e908d8 - End of configuration. [testng] [2024-03-16 00:30:29,409] [pool-1-thread-6] Initializing /data/samples/UTC24.TGA: [testng] 00:30:29,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:30:29,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:29,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-16_00-30-29.log] [testng] 00:30:29,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e80da2c - End of configuration. [testng] [2024-03-16 00:30:29,440] [pool-1-thread-5] Initializing /data/samples/MARBLES.TGA: [testng] 00:30:29,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:30:29,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:29,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-16_00-30-29.log] [testng] 00:30:29,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58e746db - End of configuration. [testng] [2024-03-16 00:30:29,556] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 00:30:29,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:30:29,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:29,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-16_00-30-29.log] [testng] 00:30:29,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7696aaf3 - End of configuration. [testng] [2024-03-16 00:30:29,725] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA: [testng] 00:30:29,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:30:29,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:29,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-16_00-30-29.log] [testng] 00:30:29,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@102383f5 - End of configuration. [testng] [2024-03-16 00:30:29,882] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA: [testng] 00:30:29,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:30:29,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:29,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-16_00-30-29.log] [testng] 00:30:29,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11b329a9 - End of configuration. [testng] [2024-03-16 00:30:33,729] [pool-1-thread-9] Initializing /data/samples/XING_B24.TGA: [testng] [2024-03-16 00:30:33,820] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] [2024-03-16 00:30:33,879] [pool-1-thread-7] Initializing /data/samples/XING_T24.TGA: [testng] [2024-03-16 00:30:33,989] [pool-1-thread-6] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-03-16 00:30:34,105] [pool-1-thread-2] Initializing /data/samples/UCM8.TGA: [testng] [2024-03-16 00:30:34,208] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: [testng] [2024-03-16 00:30:34,305] [pool-1-thread-11] Initializing /data/samples/CTC16.TGA: [testng] [2024-03-16 00:30:34,381] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA: [testng] [2024-03-16 00:30:34,464] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 17 seconds Finished: SUCCESS