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Started by upstream project "BIOFORMATS-test-repo" build number 212 originally caused by: Started by upstream project "Trigger" build number 238 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3150012012432599305.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_33612_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:23:02,082 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:23:02,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:23:02,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:02,085 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:02,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:23:02,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:23:02,086 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:23:02,086 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:02,086 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:02,087 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:23:02,087 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:23:02,087 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:23:02,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:02,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:02,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:02,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:02,362 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:02,362 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:02,362 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:02,363 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:02,363 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:23:02,364 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:23:02,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-07 01:23:02,374] [main] java.version = 1.8.0_342 [testng] 01:23:02,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:02,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-07_01-23-02.log] [testng] 01:23:02,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-10-07 01:23:02,427] [main] testng.directory = /data [testng] [2024-10-07 01:23:02,428] [main] testng.configDirectory = /config [testng] [2024-10-07 01:23:02,440] [main] testng.multiplier = 1.0 [testng] [2024-10-07 01:23:02,440] [main] testng.in-memory = false [testng] [2024-10-07 01:23:02,440] [main] testng.allow-missing = false [testng] [2024-10-07 01:23:02,440] [main] user.language = fr [testng] [2024-10-07 01:23:02,440] [main] user.country = FR [testng] [2024-10-07 01:23:02,440] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-07 01:23:34,035] [main] ---------------------------------------- [testng] [2024-10-07 01:23:34,035] [main] Total files: 4426 [testng] [2024-10-07 01:23:34,035] [main] Scan time: 31.594 s (7 ms/file) [testng] [2024-10-07 01:23:34,035] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-07 01:31:33,390] [pool-1-thread-1] Initializing /data/lzw/bigtest5.tif: [testng] 01:31:33,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:31:33,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:33,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-07_01-31-33.log] [testng] 01:31:33,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672945e7 - End of configuration. [testng] [2024-10-07 01:31:34,061] [pool-1-thread-12] Initializing /data/damian/30m.tiff: [testng] 01:31:34,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:31:34,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:34,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-07_01-31-34.log] [testng] 01:31:34,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@686abf2b - End of configuration. [testng] [2024-10-07 01:31:34,587] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z008.tif: [testng] 01:31:34,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:31:34,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:34,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-07_01-31-34.log] [testng] 01:31:34,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@166203cf - End of configuration. [testng] [2024-10-07 01:31:35,419] [pool-1-thread-10] Initializing /data/samples/cielab/Ski_TC8-03_sRGB_lab.tif: [testng] 01:31:35,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:31:35,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:35,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-07_01-31-35.log] [testng] 01:31:35,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@578792c7 - End of configuration. [testng] [2024-10-07 01:31:36,131] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z010.tif: [testng] 01:31:36,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:31:36,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:36,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-07_01-31-36.log] [testng] 01:31:36,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b0bcf81 - End of configuration. [testng] [2024-10-07 01:31:37,253] [pool-1-thread-8] Initializing /data/public/libtiff/oxford.tif: [testng] 01:31:37,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:31:37,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:37,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-07_01-31-37.log] [testng] 01:31:37,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b8f4904 - End of configuration. [testng] [2024-10-07 01:31:38,024] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z049.tif: [testng] 01:31:38,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:31:38,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:38,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-07_01-31-38.log] [testng] 01:31:38,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2738f8bf - End of configuration. [testng] [2024-10-07 01:31:38,974] [pool-1-thread-6] Initializing /data/brian/datamanager.tiff: [testng] 01:31:38,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:31:38,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:38,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-07_01-31-38.log] [testng] 01:31:38,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6788cea8 - End of configuration. [testng] [2024-10-07 01:31:39,810] [pool-1-thread-5] Initializing /data/josiah/cell-Z28.C1.tiff: [testng] 01:31:39,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:31:39,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:39,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-07_01-31-39.log] [testng] 01:31:39,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29fa05ee - End of configuration. [testng] [2024-10-07 01:31:40,389] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] 01:31:40,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:31:40,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:40,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-07_01-31-40.log] [testng] 01:31:40,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2460eb96 - End of configuration. [testng] [2024-10-07 01:31:40,819] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z062.tif: [testng] 01:31:40,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:31:40,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:40,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-07_01-31-40.log] [testng] 01:31:40,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cc00871 - End of configuration. [testng] [2024-10-07 01:31:41,346] [pool-1-thread-2] Initializing /data/samples/melissa/imagej-units/1000cmx1000cm-test.tif: [testng] 01:31:41,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:31:41,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:41,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-07_01-31-41.log] [testng] 01:31:41,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3927d72d - End of configuration. [testng] [2024-10-07 01:31:48,221] [pool-1-thread-8] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2024-10-07 01:31:48,812] [pool-1-thread-12] Initializing /data/josiah/cell-Z11.C1.tiff: [testng] [2024-10-07 01:31:49,444] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2024-10-07 01:31:50,481] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo.tif: [testng] [2024-10-07 01:31:51,726] [pool-1-thread-3] Initializing /data/josh/NESb_C2_TP6.tiff: [testng] [2024-10-07 01:31:52,511] [pool-1-thread-7] Initializing /data/josiah/cell-Z8.C0.tiff: [testng] [2024-10-07 01:31:53,158] [pool-1-thread-2] Initializing /data/damian/18m.tiff: [testng] [2024-10-07 01:31:53,835] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-32.tiff: [testng] [2024-10-07 01:31:54,515] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z007.tif: [testng] [2024-10-07 01:31:55,050] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-10-07 01:31:58,599] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z006.tif: [testng] [2024-10-07 01:31:59,375] [pool-1-thread-10] Initializing /data/misc/mri.avi: [testng] [2024-10-07 01:32:00,423] [pool-1-thread-5] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-10-07 01:32:01,199] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z009.tif: [testng] [2024-10-07 01:32:01,884] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-02.tiff: [testng] [2024-10-07 01:32:02,441] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0245.TIF: [testng] [2024-10-07 01:32:03,102] [pool-1-thread-4] Initializing /data/ascb/CYT-149_Fader_Fusion.tif: [testng] [2024-10-07 01:32:03,689] [pool-1-thread-7] Initializing /data/samples/melissa/imagej-4gb/4gb-imagej.tif: [testng] [2024-10-07 01:32:04,286] [pool-1-thread-9] Initializing /data/josh/3D Projections of stack.tif: [testng] [2024-10-07 01:32:04,841] [pool-1-thread-6] Initializing /data/stephane/Fluid Dynamics.tif: [testng] [2024-10-07 01:32:05,354] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-10-07 01:32:05,811] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z022.tif: [testng] [2024-10-07 01:32:06,914] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z002.tif: [testng] [2024-10-07 01:32:09,493] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] [2024-10-07 01:32:10,145] [pool-1-thread-5] Initializing /data/josiah/cell-Z35.C1.tiff: [testng] [2024-10-07 01:32:10,898] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z021.tif: [testng] [2024-10-07 01:32:11,594] [pool-1-thread-6] Initializing /data/josh/NESb_C2_TP3.tiff: [testng] [2024-10-07 01:32:12,256] [pool-1-thread-8] Initializing /data/public/condensation/A6.pattern1.tif: [testng] [2024-10-07 01:32:12,877] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0203.TIF: [testng] [2024-10-07 01:32:13,885] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-10-07 01:32:14,831] [pool-1-thread-9] Initializing /data/public/libtiff/jim___dg.tif: [testng] [2024-10-07 01:32:15,956] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z013.tif: [testng] [2024-10-07 01:32:16,568] [pool-1-thread-7] Initializing /data/wayne/mBoeglin_lzw/mm_7.1.2.0.tif: [testng] [2024-10-07 01:32:17,013] [pool-1-thread-10] Initializing /data/josiah/cell-Z6.C1.tiff: [testng] [2024-10-07 01:32:20,855] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z010.tif: [testng] [2024-10-07 01:32:21,624] [pool-1-thread-5] Initializing /data/josiah/cell-Z32.C0.tiff: [testng] [2024-10-07 01:32:23,013] [pool-1-thread-9] Initializing /data/wayne/apple.tif: [testng] [2024-10-07 01:32:23,715] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z023.tif: [testng] [2024-10-07 01:32:24,439] [pool-1-thread-12] Initializing /data/josiah/cell-Z3.C0.tiff: [testng] [2024-10-07 01:32:24,956] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z054.tif: [testng] [2024-10-07 01:32:25,419] [pool-1-thread-3] Initializing /data/julien/Chadisoukkarieh6.TIF: [testng] [2024-10-07 01:32:25,950] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x64.tiff: [testng] [2024-10-07 01:32:26,419] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z020.tif: [testng] [2024-10-07 01:32:26,867] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs015.TIF: [testng] [2024-10-07 01:32:27,339] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z028.tif: [testng] [2024-10-07 01:32:30,847] [pool-1-thread-1] Initializing /data/samples/melissa/imagej-last-ifd/Rat_Hippocampal_Neuron.tif: [testng] [2024-10-07 01:32:31,422] [pool-1-thread-5] Initializing 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01:35:50,526] [pool-1-thread-4] Initializing /data/ascb/FND-22_FawcettLongitudinalMammalian_4800.tif: [testng] [2024-10-07 01:35:51,161] [pool-1-thread-11] Initializing /data/public/libtiff/jello.tif: [testng] [2024-10-07 01:35:51,296] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z052.tif: [testng] [2024-10-07 01:35:51,413] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z029.tif: [testng] [2024-10-07 01:35:51,504] [pool-1-thread-2] Initializing /data/wayne/Rockies-8bit-indexed.tif: [testng] [2024-10-07 01:35:51,628] [pool-1-thread-1] Initializing /data/josiah/cell-Z23.C0.tiff: [testng] [2024-10-07 01:35:51,807] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-64.tiff: [testng] [2024-10-07 01:35:51,956] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0208.TIF: [testng] [2024-10-07 01:35:53,181] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-64.tiff: [testng] 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Initializing /data/samples/melissa/imagej-4gb/4gb-test&sizeX=1024&sizeY=1024&pixelType=uint16&sizeC=2050.fake: [testng] [2024-10-07 01:35:56,100] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] [2024-10-07 01:35:56,496] [pool-1-thread-6] Initializing /data/josiah/cell-Z24.C0.tiff: [testng] [2024-10-07 01:35:57,062] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x48.tiff: [testng] [2024-10-07 01:35:57,256] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z013.tif: [testng] [2024-10-07 01:35:57,496] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0223.TIF: [testng] [2024-10-07 01:35:57,669] [pool-1-thread-8] Initializing /data/josiah/cell-Z28.C0.tiff: [testng] [2024-10-07 01:35:57,932] [pool-1-thread-9] Initializing /data/bene/3d-example-stack.tif: [testng] [2024-10-07 01:35:58,378] [pool-1-thread-4] Initializing /data/tobias/test002_1.tif: [testng] [2024-10-07 01:35:59,018] [pool-1-thread-3] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-10-07 01:35:59,287] [pool-1-thread-6] Initializing /data/qa-4745/LIBPB476_Figure 1_H_NA_21879.tiff: [testng] [2024-10-07 01:35:59,453] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-05.tiff: [testng] [2024-10-07 01:35:59,667] [pool-1-thread-5] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-10-07 01:36:00,026] [pool-1-thread-11] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-10-07 01:36:00,302] [pool-1-thread-7] Initializing /data/samples/cielab/Ski_TC8-03_abs.tif: [testng] [2024-10-07 01:36:00,822] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-05.tiff: [testng] [2024-10-07 01:36:01,003] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x64.tiff: [testng] [2024-10-07 01:36:01,171] [pool-1-thread-8] Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-10-07 01:36:02,057] [pool-1-thread-4] Initializing /data/michael/MFISH.tiff: [testng] [2024-10-07 01:36:02,278] [pool-1-thread-10] Initializing /data/wayne/MyoblastCells-8bit.tiff: [testng] [2024-10-07 01:36:02,462] [pool-1-thread-12] Initializing /data/wayne/m51-16bit.tif: [testng] [2024-10-07 01:36:02,614] [pool-1-thread-5] Initializing /data/public/condensation/E4.pattern7.tif: [testng] [2024-10-07 01:36:02,789] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z022.tif: [testng] [2024-10-07 01:36:02,986] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0237.TIF: [testng] [2024-10-07 01:36:03,215] [pool-1-thread-1] Initializing /data/lzw/test.tif: [testng] [2024-10-07 01:36:03,782] [pool-1-thread-11] Initializing /data/misc/wtembryo.tiff: [testng] [2024-10-07 01:36:04,136] [pool-1-thread-2] Initializing /data/public/condensation/A6.pattern2.tif: [testng] [2024-10-07 01:36:04,596] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z006.tif: [testng] [2024-10-07 01:36:05,062] [pool-1-thread-8] Initializing /data/stephane/Copy of listeria + clathrin1_w3Cy5.tif: [testng] [2024-10-07 01:36:05,391] [pool-1-thread-5] Initializing /data/julien/CRBMquadtour.tif: [testng] [2024-10-07 01:36:08,107] [pool-1-thread-4] Initializing /data/ascb/CYT-56_HowellGolgiRibbonRaw_4800.tif: [testng] [2024-10-07 01:36:08,863] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z037.tif: [testng] [2024-10-07 01:36:09,620] [pool-1-thread-10] Initializing /data/julien/MarjorieCoisy1.TIF: [testng] [2024-10-07 01:36:09,967] [pool-1-thread-1] Initializing /data/public/condensation/A10.pattern5.tif: [testng] [2024-10-07 01:36:10,349] [pool-1-thread-3] Initializing /data/ascb/FND-12_PorterFranziniSarcoplasmic_4800.tif: [testng] [2024-10-07 01:36:10,542] [pool-1-thread-6] Initializing /data/josiah/cell-Z32.C1.tiff: [testng] [2024-10-07 01:36:10,816] [pool-1-thread-12] Initializing /data/public/libtiff/jim___gg.tif: [testng] [2024-10-07 01:36:11,065] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z032.tif: [testng] [2024-10-07 01:36:11,260] [pool-1-thread-11] Initializing /data/alexa/test4.tif: [testng] [2024-10-07 01:36:11,353] [pool-1-thread-2] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] [2024-10-07 01:36:12,674] [pool-1-thread-8] Initializing /data/josiah/cell-Z30.C1.tiff: [testng] [2024-10-07 01:36:13,135] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] [2024-10-07 01:36:13,826] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z032.tif: [testng] [2024-10-07 01:36:13,941] [pool-1-thread-6] Initializing /data/jae/25Jan10_MDCK_2R_3Dstack_60x_1.tif: [testng] [2024-10-07 01:36:14,093] [pool-1-thread-9] Initializing /data/curtis/tubhiswt-5D.tif: [testng] [2024-10-07 01:36:14,259] [pool-1-thread-12] Initializing /data/johan/Test1_12.tif: [testng] [2024-10-07 01:36:14,506] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0210.TIF: 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[testng] [2024-10-07 01:36:35,610] [pool-1-thread-8] Initializing /data/josiah/cell-Z27.C0.tiff: [testng] [2024-10-07 01:36:35,920] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z050.tif: [testng] [2024-10-07 01:36:36,362] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0251.TIF: [testng] [2024-10-07 01:36:36,703] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] [2024-10-07 01:36:36,953] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z015.tif: [testng] [2024-10-07 01:36:37,395] [pool-1-thread-6] Initializing /data/ascb/FND-27a_PaladeGolgiLabeled_4800.tif: [testng] [2024-10-07 01:36:43,443] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z060.tif: [testng] [2024-10-07 01:36:43,892] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z023.tif: [testng] [2024-10-07 01:36:44,396] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0255.TIF: [testng] [2024-10-07 01:36:44,666] [pool-1-thread-11] 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[pool-1-thread-12] Initializing /data/ascb/FND-27_PaladeGolgi_4800.tif: [testng] [2024-10-07 01:37:51,384] [pool-1-thread-6] Initializing /data/public/condensation/C4.pattern.tif: [testng] [2024-10-07 01:37:51,955] [pool-1-thread-8] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2024-10-07 01:37:52,350] [pool-1-thread-3] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-10-07 01:37:52,944] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z043.tif: [testng] [2024-10-07 01:37:53,212] [pool-1-thread-7] Initializing /data/brian/MFGTMP_080902150001t001B02f73d2.TIF: [testng] [2024-10-07 01:37:53,621] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z051.tif: [testng] [2024-10-07 01:37:54,085] [pool-1-thread-9] Initializing /data/samples/melissa/strike-uncompressed.tiff: [testng] [2024-10-07 01:37:54,482] [pool-1-thread-10] Initializing /data/ascb/CYT-91_PasolliMouse1a_4800.tif: [testng] [2024-10-07 01:37:57,584] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z024.tif: [testng] [2024-10-07 01:37:58,576] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-60.tiff: [testng] [2024-10-07 01:37:59,423] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z033.tif: [testng] [2024-10-07 01:37:59,847] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z028.tif: [testng] [2024-10-07 01:38:00,249] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0211.TIF: [testng] [2024-10-07 01:38:00,492] [pool-1-thread-1] Initializing /data/curtis/test1.tiff: [testng] [2024-10-07 01:38:00,753] [pool-1-thread-6] Initializing /data/christine/Image5D_4color test stack/RGB from I5D.tif: [testng] [2024-10-07 01:38:01,377] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z004.tif: [testng] [2024-10-07 01:38:03,152] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z053.tif: [testng] [2024-10-07 01:38:03,486] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-10-07 01:38:03,923] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z003.tif: [testng] [2024-10-07 01:38:04,197] [pool-1-thread-4] Initializing /data/public/cellprofiler/fruit-fly-cells/POS076.pattern/POS076.pattern: [testng] [2024-10-07 01:38:05,090] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z032.tif: [testng] [2024-10-07 01:38:05,463] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z035.tif: [testng] [2024-10-07 01:38:05,844] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z010.tif: [testng] [2024-10-07 01:38:06,062] [pool-1-thread-9] Initializing /data/josiah/cell-Z31.C1.tiff: [testng] [2024-10-07 01:38:06,694] [pool-1-thread-7] Initializing /data/damian/00m.tiff: [testng] [2024-10-07 01:38:07,763] [pool-1-thread-6] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-10-07 01:38:08,188] [pool-1-thread-10] Initializing /data/ascb/FND-1_PorterClaudeFullamFirst_4800.tif: [testng] [2024-10-07 01:38:08,623] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-10-07 01:38:09,024] [pool-1-thread-3] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-10-07 01:38:09,310] [pool-1-thread-2] Initializing /data/brian/Alx-488-pk.tif: [testng] [2024-10-07 01:38:11,317] [pool-1-thread-1] Initializing /data/curtis/map/the-quick: [testng] [2024-10-07 01:38:11,700] [pool-1-thread-11] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] [2024-10-07 01:38:12,150] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0207.TIF: [testng] [2024-10-07 01:38:12,558] [pool-1-thread-7] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-10-07 01:38:12,818] [pool-1-thread-9] Initializing /data/public/condensation/A6.pattern3.tif: [testng] [2024-10-07 01:38:13,489] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0209.TIF: [testng] [2024-10-07 01:38:13,993] [pool-1-thread-6] Initializing /data/misc/mri.eps: [testng] [2024-10-07 01:38:15,243] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0246.TIF: [testng] [2024-10-07 01:38:15,769] [pool-1-thread-3] Initializing /data/josiah/cell-Z7.C1.tiff: [testng] [2024-10-07 01:38:16,652] [pool-1-thread-2] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] [2024-10-07 01:38:17,414] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z011.tif: [testng] [2024-10-07 01:38:18,252] [pool-1-thread-10] Initializing /data/public/libtiff/cramps-tile.tif: [testng] [2024-10-07 01:38:18,820] [pool-1-thread-11] Initializing /data/ascb/CYT-151_Raben_Noncontractile.tif: [testng] [2024-10-07 01:38:19,074] [pool-1-thread-7] Initializing /data/josiah/cell-Z30.C0.tiff: [testng] [2024-10-07 01:38:19,287] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z015.tif: [testng] [2024-10-07 01:38:19,472] [pool-1-thread-8] Initializing /data/public/condensation/C4.pattern9.tif: [testng] [2024-10-07 01:38:21,110] [pool-1-thread-12] Initializing /data/ascb/bad/FND-20_FawcettLongitudinalMidpieces_4800.tif: [testng] [2024-10-07 01:38:21,760] [pool-1-thread-6] Initializing /data/big-images/2kx2k.tif: [testng] [2024-10-07 01:38:22,263] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z007.tif: [testng] [2024-10-07 01:38:22,666] [pool-1-thread-2] Initializing /data/josiah/cell-Z2.C0.tiff: [testng] [2024-10-07 01:38:23,039] [pool-1-thread-9] Initializing /data/josiah/cell-Z21.C1.tiff: [testng] [2024-10-07 01:38:23,445] [pool-1-thread-1] Initializing /data/lzw/Cholinergic.tif: [testng] [2024-10-07 01:38:23,769] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z048.tif: [testng] [2024-10-07 01:38:24,235] [pool-1-thread-7] Initializing /data/ascb/14312-p125A colocalization.tif: [testng] [2024-10-07 01:38:24,644] [pool-1-thread-10] Initializing /data/unknown/epsImgColony.tif: [testng] [2024-10-07 01:38:24,906] [pool-1-thread-4] Initializing 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[2024-10-07 01:38:58,032] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x48.tiff: [testng] [2024-10-07 01:38:59,525] [pool-1-thread-1] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs001.TIF: [testng] [2024-10-07 01:39:00,110] [pool-1-thread-7] Initializing /data/qa-4968/twocars2.tif: [testng] [2024-10-07 01:39:00,439] [pool-1-thread-2] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs000.TIF: [testng] [2024-10-07 01:39:00,793] [pool-1-thread-4] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs013.TIF: [testng] [2024-10-07 01:39:00,970] [pool-1-thread-6] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-10-07 01:39:01,170] [pool-1-thread-12] Initializing /data/boguslaw/Arabidopsis.tiff: [testng] [2024-10-07 01:39:01,346] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs008.TIF: [testng] [2024-10-07 01:39:01,602] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z063.tif: [testng] [2024-10-07 01:39:03,779] [pool-1-thread-10] Initializing /data/curtis/map/jumps-over: [testng] [2024-10-07 01:39:04,020] [pool-1-thread-1] Initializing /data/qa-20514/819_2.tif: [testng] [2024-10-07 01:39:04,424] [pool-1-thread-12] Initializing /data/damian/03m.tiff: [testng] [2024-10-07 01:39:04,755] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0249.TIF: [testng] [2024-10-07 01:39:05,282] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z058.tif: [testng] [2024-10-07 01:39:05,489] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z031.tif: [testng] [2024-10-07 01:39:06,063] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-10-07 01:39:06,538] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z024.tif: [testng] [2024-10-07 01:39:07,412] [pool-1-thread-10] Initializing /data/edward/TestDoc2.tif: [testng] [2024-10-07 01:39:08,214] [pool-1-thread-4] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs017.TIF: [testng] [2024-10-07 01:39:08,458] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x32.tiff: [testng] [2024-10-07 01:39:08,686] [pool-1-thread-12] Initializing /data/josiah/cell-Z9.C0.tiff: [testng] [2024-10-07 01:39:08,912] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z031.tif: [testng] [2024-10-07 01:39:09,085] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0247.TIF: [testng] [2024-10-07 01:39:09,249] [pool-1-thread-9] Initializing /data/ascb/CYT-2_BaintonBoylesPhagocytosisYeastB_4800.tif: [testng] [2024-10-07 01:39:09,365] [pool-1-thread-3] Initializing /data/josiah/cell-Z8.C1.tiff: [testng] [2024-10-07 01:39:11,859] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z022.tif: [testng] [2024-10-07 01:39:12,360] [pool-1-thread-12] Initializing /data/curtis/test2.tiff: [testng] [2024-10-07 01:39:12,763] [pool-1-thread-7] Initializing /data/jae/Rat_Hippocampal_Neuron.tif: [testng] [2024-10-07 01:39:13,058] [pool-1-thread-3] Initializing /data/ascb/bad/FND-17_FawcettNucleus_4800.tif: [testng] [2024-10-07 01:39:13,331] [pool-1-thread-6] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-10-07 01:39:13,674] [pool-1-thread-1] Initializing /data/misc/mri-old.mov: [testng] [2024-10-07 01:39:13,730] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z051.tif: [testng] [2024-10-07 01:39:13,950] [pool-1-thread-4] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-10-07 01:39:14,259] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z029.tif: [testng] [2024-10-07 01:39:15,730] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z011.tif: [testng] [2024-10-07 01:39:16,584] [pool-1-thread-10] Initializing /data/josh/NESb_C2_TP8.tiff: [testng] [2024-10-07 01:39:17,159] [pool-1-thread-2] Initializing /data/public/condensation/A1.pattern1.tif: [testng] [2024-10-07 01:39:17,683] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z009.tif: [testng] [2024-10-07 01:39:17,999] [pool-1-thread-4] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs011.TIF: [testng] [2024-10-07 01:39:18,237] [pool-1-thread-8] Initializing /data/tamjid/Image_843.tif: [testng] [2024-10-07 01:39:18,404] [pool-1-thread-7] Initializing /data/damian/damian.tif: [testng] [2024-10-07 01:39:18,566] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z027.tif: [testng] [2024-10-07 01:39:19,327] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-10-07 01:39:20,134] [pool-1-thread-1] Initializing /data/jacques/20110629-Spat-1_1.tif: [testng] [2024-10-07 01:39:26,639] [pool-1-thread-10] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] [2024-10-07 01:39:26,817] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0258.TIF: [testng] [2024-10-07 01:39:27,533] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z001.tif: [testng] [2024-10-07 01:39:27,735] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0243.TIF: [testng] [2024-10-07 01:39:27,926] [pool-1-thread-11] Initializing /data/misc/ms-paint.png: [testng] [2024-10-07 01:39:28,130] [pool-1-thread-4] Initializing /data/josh/NESb_C2_TP4.tiff: [testng] [2024-10-07 01:39:29,491] [pool-1-thread-9] Initializing /data/jae/frogeggs.tif: [testng] [2024-10-07 01:39:30,463] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 minutes 41 seconds Finished: SUCCESS