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Started by upstream project "BIOFORMATS-test-repo" build number 212 originally caused by: Started by upstream project "Trigger" build number 238 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins18230186418815001391.sh + '[' bigtiff = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_33643_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:39:46,051 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:39:46,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:39:46,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:39:46,054 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:39:46,054 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:39:46,054 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:39:46,054 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:39:46,054 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:39:46,055 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:39:46,055 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:39:46,055 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:39:46,055 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:39:46,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:39:46,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:39:46,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:39:46,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:39:46,311 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:39:46,312 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:39:46,312 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:39:46,312 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:39:46,312 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:39:46,313 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:39:46,313 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-07 01:39:46,323] [main] java.version = 1.8.0_342 [testng] 01:39:46,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:39:46,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:39:46,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-07_01-39-46.log] [testng] 01:39:46,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-10-07 01:39:46,374] [main] testng.directory = /data [testng] [2024-10-07 01:39:46,374] [main] testng.configDirectory = /config [testng] [2024-10-07 01:39:46,386] [main] testng.multiplier = 1.0 [testng] [2024-10-07 01:39:46,387] [main] testng.in-memory = false [testng] [2024-10-07 01:39:46,387] [main] testng.allow-missing = false [testng] [2024-10-07 01:39:46,387] [main] user.language = fr [testng] [2024-10-07 01:39:46,387] [main] user.country = FR [testng] [2024-10-07 01:39:46,387] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-07 01:39:47,223] [main] ---------------------------------------- [testng] [2024-10-07 01:39:47,223] [main] Total files: 14 [testng] [2024-10-07 01:39:47,223] [main] Scan time: 0.836 s (59 ms/file) [testng] [2024-10-07 01:39:47,223] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-07 01:39:59,937] [pool-1-thread-1] Initializing /data/carlsen/Olympics8.tif: [testng] 01:39:59,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:39:59,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:39:59,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-07_01-39-59.log] [testng] 01:39:59,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5197577d - End of configuration. [testng] [2024-10-07 01:40:00,077] [pool-1-thread-12] Initializing /data/colin/7S59P8I1_F00000012.btf: [testng] 01:40:00,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:40:00,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:00,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-07_01-40-00.log] [testng] 01:40:00,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@362c9a0a - End of configuration. [testng] [2024-10-07 01:40:01,999] [pool-1-thread-11] Initializing /data/carlsen/Olympics8-lzw.tif: [testng] 01:40:01,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:40:01,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:02,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-07_01-40-02.log] [testng] 01:40:02,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d48536a - End of configuration. [testng] [2024-10-07 01:40:02,088] [pool-1-thread-10] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif: [testng] 01:40:02,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:40:02,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:02,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-07_01-40-02.log] [testng] 01:40:02,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69029c4b - End of configuration. [testng] [2024-10-07 01:40:02,198] [pool-1-thread-9] Initializing /data/samples/BigTIFFLong8Tiles.tif: [testng] 01:40:02,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:40:02,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:02,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-07_01-40-02.log] [testng] 01:40:02,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39e5147 - End of configuration. [testng] [2024-10-07 01:40:02,263] [pool-1-thread-8] Initializing /data/samples/Classic.tif: [testng] 01:40:02,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:40:02,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:02,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-07_01-40-02.log] [testng] 01:40:02,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d1204c3 - End of configuration. [testng] [2024-10-07 01:40:02,342] [pool-1-thread-7] Initializing /data/samples/BigTIFFLong8.tif: [testng] 01:40:02,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:40:02,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:02,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-07_01-40-02.log] [testng] 01:40:02,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@be5ae8e - End of configuration. [testng] [2024-10-07 01:40:02,438] [pool-1-thread-6] Initializing /data/samples/BigTIFFLong.tif: [testng] 01:40:02,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:40:02,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:02,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-07_01-40-02.log] [testng] 01:40:02,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@752c709e - End of configuration. [testng] [2024-10-07 01:40:02,558] [pool-1-thread-5] Initializing /data/samples/BigTIFF.tif: [testng] 01:40:02,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:40:02,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:02,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-07_01-40-02.log] [testng] 01:40:02,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17994c7c - End of configuration. [testng] [2024-10-07 01:40:02,681] [pool-1-thread-4] Initializing /data/carlsen/Olympics8-raw.tif: [testng] 01:40:02,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:40:02,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:02,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-07_01-40-02.log] [testng] 01:40:02,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cded989 - End of configuration. [testng] [2024-10-07 01:40:02,796] [pool-1-thread-3] Initializing /data/samples/BigTIFFSubIFD8.tif: [testng] 01:40:02,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:40:02,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:02,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-07_01-40-02.log] [testng] 01:40:02,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56760598 - End of configuration. [testng] [2024-10-07 01:40:02,913] [pool-1-thread-2] Initializing /data/samples/BigTIFFMotorola.tif: [testng] 01:40:02,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:40:02,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:02,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-07_01-40-02.log] [testng] 01:40:02,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ab099fe - End of configuration. [testng] [2024-10-07 01:40:07,061] [pool-1-thread-5] Initializing /data/samples/BigTIFFSubIFD4.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 36 seconds Finished: SUCCESS