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Started by upstream project "BIOFORMATS-test-repo" build number 213 originally caused by: Started by upstream project "Trigger" build number 240 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5864962874455470544.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33806_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 06:26:35,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:26:35,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 06:26:35,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:26:35,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:26:35,962 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:26:35,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:26:35,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:26:35,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:26:35,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:26:35,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:26:35,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:26:35,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:26:36,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:26:36,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:26:36,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:26:36,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:26:36,188 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:26:36,188 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:26:36,188 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:26:36,189 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:26:36,189 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 06:26:36,190 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 06:26:36,190 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 227 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-08 06:26:36,199] [main] java.version = 11.0.16 [testng] 06:26:36,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:26:36,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:26:36,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_06-26-36.log] [testng] 06:26:36,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-08 06:26:36,252] [main] testng.directory = /data [testng] [2024-10-08 06:26:36,253] [main] testng.configDirectory = /config [testng] [2024-10-08 06:26:36,263] [main] testng.multiplier = 1.0 [testng] [2024-10-08 06:26:36,265] [main] testng.in-memory = false [testng] [2024-10-08 06:26:36,265] [main] testng.allow-missing = false [testng] [2024-10-08 06:26:36,265] [main] user.language = en [testng] [2024-10-08 06:26:36,265] [main] user.country = ${user.country} [testng] [2024-10-08 06:26:36,265] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-08 06:26:48,424] [main] ---------------------------------------- [testng] [2024-10-08 06:26:48,425] [main] Total files: 259 [testng] [2024-10-08 06:26:48,425] [main] Scan time: 12.159 s (46 ms/file) [testng] [2024-10-08 06:26:48,425] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-08 06:32:22,368] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] 06:32:22,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:32:22,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:22,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_06-32-22.log] [testng] 06:32:22,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f3c6de9 - End of configuration. [testng] [2024-10-08 06:32:22,616] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib: [testng] 06:32:22,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:32:22,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:22,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_06-32-22.log] [testng] 06:32:22,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fc645f0 - End of configuration. [testng] [2024-10-08 06:32:22,864] [pool-1-thread-11] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 06:32:22,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:32:22,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:22,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_06-32-22.log] [testng] 06:32:22,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@633836a7 - End of configuration. [testng] [2024-10-08 06:32:23,306] [pool-1-thread-10] Initializing /data/marc/V0606J.oib: [testng] 06:32:23,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:32:23,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:23,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_06-32-23.log] [testng] 06:32:23,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63b98946 - End of configuration. [testng] [2024-10-08 06:32:24,596] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] 06:32:24,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:32:24,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:24,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_06-32-24.log] [testng] 06:32:24,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@233dca2c - End of configuration. [testng] [2024-10-08 06:32:24,623] [pool-1-thread-8] Initializing /data/karl/Image0009.oib: [testng] 06:32:24,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:32:24,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:24,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_06-32-24.log] [testng] 06:32:24,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f1d98be - End of configuration. [testng] [2024-10-08 06:32:24,754] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] 06:32:24,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:32:24,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:24,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_06-32-24.log] [testng] 06:32:24,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d595d91 - End of configuration. [testng] [2024-10-08 06:32:25,117] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] 06:32:25,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:32:25,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:25,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_06-32-25.log] [testng] 06:32:25,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b63b2df - End of configuration. [testng] [2024-10-08 06:32:25,493] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF: [testng] 06:32:25,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:32:25,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:25,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_06-32-25.log] [testng] 06:32:25,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@357ee9eb - End of configuration. [testng] [2024-10-08 06:32:29,555] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] 06:32:29,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:32:29,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:29,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_06-32-29.log] [testng] 06:32:29,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61fbdb7 - End of configuration. [testng] [2024-10-08 06:32:29,735] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] 06:32:29,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:32:29,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:29,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_06-32-29.log] [testng] 06:32:29,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@741fabcc - End of configuration. [testng] [2024-10-08 06:32:29,927] [pool-1-thread-2] Initializing /data/brian/Lambda10nm.oib: [testng] 06:32:29,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:32:29,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:29,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_06-32-29.log] [testng] 06:32:29,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12d6ea29 - End of configuration. [testng] [2024-10-08 06:32:32,524] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-10-08 06:32:32,776] [pool-1-thread-8] Initializing /data/molly/11OCT4.OIF: [testng] [2024-10-08 06:32:35,577] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] [2024-10-08 06:32:36,330] [pool-1-thread-12] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-10-08 06:32:36,637] [pool-1-thread-3] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-10-08 06:32:36,908] [pool-1-thread-1] Initializing /data/glen/notsaturated.oib: [testng] [2024-10-08 06:32:37,371] [pool-1-thread-11] Initializing /data/glen/simulstack.oib: [testng] [2024-10-08 06:32:37,763] [pool-1-thread-7] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-10-08 06:32:38,071] [pool-1-thread-6] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-10-08 06:32:39,645] [pool-1-thread-3] Initializing /data/david/Image0016.oif: [testng] [2024-10-08 06:32:40,273] [pool-1-thread-9] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-10-08 06:32:42,800] [pool-1-thread-12] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-10-08 06:32:44,358] [pool-1-thread-7] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-10-08 06:32:44,879] [pool-1-thread-1] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-10-08 06:32:45,120] [pool-1-thread-11] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-10-08 06:32:45,337] [pool-1-thread-6] Initializing /data/chris/missegragation-15.oib: [testng] [2024-10-08 06:32:45,689] [pool-1-thread-4] Initializing /data/simon/used_to_work.oib: [testng] [2024-10-08 06:32:47,294] [pool-1-thread-6] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-10-08 06:32:47,769] [pool-1-thread-11] Initializing /data/johannes/step5b.bmp: [testng] [2024-10-08 06:32:47,831] [pool-1-thread-1] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-10-08 06:32:48,296] [pool-1-thread-10] Initializing /data/molly/11OCT10.OIF: [testng] [2024-10-08 06:32:53,077] [pool-1-thread-7] Initializing /data/molly/11OCT9.OIF: [testng] [2024-10-08 06:33:00,217] [pool-1-thread-11] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-10-08 06:33:00,687] [pool-1-thread-4] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-10-08 06:33:01,893] [pool-1-thread-6] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-10-08 06:33:03,714] [pool-1-thread-4] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-10-08 06:33:04,262] [pool-1-thread-12] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-10-08 06:33:06,057] [pool-1-thread-12] Initializing /data/molly/11OCT3.OIF: [testng] [2024-10-08 06:33:25,552] [pool-1-thread-6] Initializing /data/molly/11OCT7.OIF: [testng] [2024-10-08 06:33:30,242] [pool-1-thread-3] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-10-08 06:34:07,271] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-10-08 06:34:07,982] [pool-1-thread-1] Initializing /data/allan/62909#1.oib: [testng] [2024-10-08 06:34:09,645] [pool-1-thread-1] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-10-08 06:34:10,997] [pool-1-thread-4] Initializing /data/molly/11OCT5.OIF: [testng] [2024-10-08 06:34:19,413] [pool-1-thread-11] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-10-08 06:34:21,713] [pool-1-thread-11] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-10-08 06:35:02,923] [pool-1-thread-3] Initializing /data/tom/RGB-1.avi: [testng] [2024-10-08 06:35:04,500] [pool-1-thread-3] Initializing /data/glen/singleseqframe.oif: [testng] [2024-10-08 06:35:25,821] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-10-08 06:35:30,363] [pool-1-thread-3] Initializing /data/jae/Image0001.oib: [testng] [2024-10-08 06:35:34,360] [pool-1-thread-3] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-10-08 06:35:55,849] [pool-1-thread-3] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-10-08 06:36:01,269] [pool-1-thread-3] Initializing /data/glen/singlesimul.oif: [testng] [2024-10-08 06:36:50,210] [pool-1-thread-3] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-10-08 06:36:54,937] [pool-1-thread-3] Initializing /data/michael/CELL3.oib: [testng] [2024-10-08 06:36:59,151] [pool-1-thread-3] Initializing /data/simon/never_worked.oib: [testng] [2024-10-08 06:37:03,322] [pool-1-thread-3] Initializing /data/aryeh/control_test.oib: [testng] [2024-10-08 06:37:25,118] [pool-1-thread-3] Initializing /data/brian/lambda02nm.oib: [testng] [2024-10-08 06:37:30,427] [pool-1-thread-3] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-10-08 06:37:35,388] [pool-1-thread-3] Initializing /data/johannes/step1.bmp: [testng] [2024-10-08 06:37:37,853] [pool-1-thread-3] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-10-08 06:37:43,493] [pool-1-thread-3] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-10-08 06:37:48,713] [pool-1-thread-3] Initializing /data/yoshihito/XY.oif: [testng] [2024-10-08 06:38:11,555] [pool-1-thread-3] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-10-08 06:38:17,431] [pool-1-thread-3] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-10-08 06:40:32,172] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] [2024-10-08 06:42:54,695] [pool-1-thread-8] Initializing /data/brian/FLIP.oib: [testng] [2024-10-08 06:42:59,070] [pool-1-thread-8] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-10-08 06:43:04,765] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-10-08 06:43:07,494] [pool-1-thread-8] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-10-08 06:43:09,928] [pool-1-thread-8] Initializing /data/glen/Null file/test change.oif: [testng] [2024-10-08 06:43:19,517] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-10-08 06:43:23,198] [pool-1-thread-1] Initializing /data/molly/11OCT8.OIF: [testng] [2024-10-08 06:43:34,623] [pool-1-thread-8] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-10-08 06:43:38,315] [pool-1-thread-8] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-10-08 06:43:42,382] [pool-1-thread-8] Initializing /data/molly/11OCT6.OIF: [testng] [2024-10-08 06:44:25,774] [pool-1-thread-3] Initializing /data/glen/singlesimul.oib: [testng] [2024-10-08 06:44:29,248] [pool-1-thread-3] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-10-08 06:44:48,133] [pool-1-thread-6] Initializing /data/christian/20min.oif: [testng] [2024-10-08 06:44:59,790] [pool-1-thread-6] Initializing /data/marc/V0606L.oib: [testng] [2024-10-08 06:45:03,820] [pool-1-thread-3] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-10-08 06:45:15,941] [pool-1-thread-6] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-10-08 06:45:29,970] [pool-1-thread-6] Initializing /data/johannes/step4b.bmp: [testng] [2024-10-08 06:45:31,837] [pool-1-thread-6] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-10-08 06:45:34,223] [pool-1-thread-6] Initializing /data/aryeh/1h.oib: [testng] [2024-10-08 06:45:40,336] [pool-1-thread-6] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-10-08 06:45:43,623] [pool-1-thread-9] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-10-08 06:45:45,395] [pool-1-thread-6] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-10-08 06:45:46,047] [pool-1-thread-6] Initializing /data/david/Image0016.oib: [testng] [2024-10-08 06:45:47,964] [pool-1-thread-6] Initializing /data/monica/Image0056.oif: [testng] [2024-10-08 06:45:50,961] [pool-1-thread-4] Initializing /data/glen/Image0002.oif: [testng] [2024-10-08 06:46:12,755] [pool-1-thread-6] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-10-08 06:46:16,519] [pool-1-thread-6] Initializing /data/yasunori/series_1.oib: [testng] [2024-10-08 06:46:20,170] [pool-1-thread-6] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-10-08 06:46:42,004] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-10-08 06:46:45,511] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-10-08 06:46:50,180] [pool-1-thread-6] Initializing /data/johannes/step3.bmp: [testng] [2024-10-08 06:46:52,065] [pool-1-thread-6] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-10-08 06:48:11,731] [pool-1-thread-10] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-10-08 06:48:15,651] [pool-1-thread-10] Initializing /data/kay/IM2pg.oib: [testng] [2024-10-08 06:48:20,078] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-10-08 06:48:23,533] [pool-1-thread-10] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-10-08 06:48:29,830] [pool-1-thread-10] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-10-08 06:48:30,710] [pool-1-thread-2] Initializing /data/glen/4205basal106072.oif: [testng] [2024-10-08 06:48:43,755] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-10-08 06:49:48,785] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-10-08 06:49:55,806] [pool-1-thread-6] Initializing /data/glen/seqlinestack.oif: [testng] [2024-10-08 06:51:09,079] [pool-1-thread-3] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-10-08 06:51:13,957] [pool-1-thread-3] Initializing /data/glen/singleseqframe.oib: [testng] [2024-10-08 06:51:17,978] [pool-1-thread-3] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-10-08 06:51:22,593] [pool-1-thread-3] Initializing /data/pedro/plv-test.oib: [testng] [2024-10-08 06:51:26,890] [pool-1-thread-3] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-10-08 06:53:58,265] [pool-1-thread-9] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-10-08 06:54:39,421] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-10-08 06:54:44,640] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-10-08 06:54:48,629] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-10-08 06:54:52,302] [pool-1-thread-5] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-10-08 06:55:01,004] [pool-1-thread-5] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-10-08 06:55:06,440] [pool-1-thread-5] Initializing /data/glen/seqlinestack.oib: [testng] [2024-10-08 06:55:13,568] [pool-1-thread-5] Initializing /data/sten/01.oib: [testng] [2024-10-08 06:55:18,505] [pool-1-thread-5] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-10-08 06:55:24,738] [pool-1-thread-5] Initializing /data/johannes/step2.bmp: [testng] [2024-10-08 06:55:27,976] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-10-08 06:57:30,944] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-10-08 06:57:36,252] [pool-1-thread-7] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-10-08 06:57:41,613] [pool-1-thread-7] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-10-08 06:58:06,904] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-10-08 06:58:11,071] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-10-08 06:58:16,198] [pool-1-thread-7] Initializing /data/glen/singleseqline.oib: [testng] [2024-10-08 06:58:18,828] [pool-1-thread-7] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-10-08 06:58:22,041] [pool-1-thread-7] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-10-08 06:58:25,431] [pool-1-thread-7] Initializing /data/glen/singleseqline.oif: [testng] [2024-10-08 06:58:36,531] [pool-1-thread-1] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-10-08 06:58:48,738] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-10-08 06:58:52,084] [pool-1-thread-7] Initializing /data/molly/11OCT11.OIF: [testng] [2024-10-08 06:59:06,607] [pool-1-thread-4] Initializing /data/brian/Kaede15.oib: [testng] [2024-10-08 06:59:10,842] [pool-1-thread-4] Initializing /data/tom/zseries-test.oib: [testng] [2024-10-08 06:59:16,918] [pool-1-thread-4] Initializing /data/glen/notsaturated.oif: [testng] [2024-10-08 06:59:25,673] [pool-1-thread-1] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-10-08 06:59:30,801] [pool-1-thread-1] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-10-08 06:59:32,691] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-10-08 06:59:39,975] [pool-1-thread-1] Initializing /data/glen/LUT issue/Greenredfarred.oif: time="2024-10-08T06:01:38Z" level=error msg="error waiting for container: unexpected EOF" Build step 'Execute shell' marked build as failure Finished: FAILURE