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Started by upstream project "BIOFORMATS-test-repo" build number 214 originally caused by: Started by upstream project "Trigger" build number 241 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins14372457304853994944.sh + '[' lim = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33943_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 08:44:40,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:44:40,531 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 08:44:40,532 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:44:40,533 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:44:40,534 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:44:40,534 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:44:40,535 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:44:40,535 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:44:40,535 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:44:40,536 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:44:40,537 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:44:40,537 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:44:40,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:44:40,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:44:40,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:44:40,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:44:40,744 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:44:40,744 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:44:40,744 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:44:40,745 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:44:40,745 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 08:44:40,746 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 08:44:40,746 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-08 08:44:40,754] [main] java.version = 11.0.16 [testng] 08:44:40,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:44:40,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:40,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_08-44-40.log] [testng] 08:44:40,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-08 08:44:40,802] [main] testng.directory = /data [testng] [2024-10-08 08:44:40,802] [main] testng.configDirectory = /config [testng] [2024-10-08 08:44:40,813] [main] testng.multiplier = 1.0 [testng] [2024-10-08 08:44:40,814] [main] testng.in-memory = false [testng] [2024-10-08 08:44:40,814] [main] testng.allow-missing = false [testng] [2024-10-08 08:44:40,814] [main] user.language = en [testng] [2024-10-08 08:44:40,814] [main] user.country = ${user.country} [testng] [2024-10-08 08:44:40,815] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-08 08:44:41,368] [main] ---------------------------------------- [testng] [2024-10-08 08:44:41,368] [main] Total files: 21 [testng] [2024-10-08 08:44:41,368] [main] Scan time: 0.553 s (26 ms/file) [testng] [2024-10-08 08:44:41,368] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-08 08:44:45,400] [pool-1-thread-1] Initializing /data/venu/Kontrolle0009.lim: [testng] 08:44:45,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:44:45,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:45,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_08-44-45.log] [testng] 08:44:45,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b6f145a - End of configuration. [testng] [2024-10-08 08:44:45,682] [pool-1-thread-12] Initializing /data/venu/Kontrolle0012.lim: [testng] 08:44:45,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:44:45,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:45,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_08-44-45.log] [testng] 08:44:45,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71c0a97e - End of configuration. [testng] [2024-10-08 08:44:45,929] [pool-1-thread-11] Initializing /data/venu/Kontrolle0007.lim: [testng] 08:44:45,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:44:45,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:45,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_08-44-45.log] [testng] 08:44:45,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64ac3335 - End of configuration. [testng] [2024-10-08 08:44:46,174] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim: [testng] 08:44:46,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:44:46,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:46,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_08-44-46.log] [testng] 08:44:46,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f780db - End of configuration. [testng] [2024-10-08 08:44:46,402] [pool-1-thread-9] Initializing /data/venu/Kontrolle0019.lim: [testng] 08:44:46,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:44:46,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:46,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_08-44-46.log] [testng] 08:44:46,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a967501 - End of configuration. [testng] [2024-10-08 08:44:46,653] [pool-1-thread-8] Initializing /data/venu/Kontrolle0020.lim: [testng] 08:44:46,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:44:46,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:46,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_08-44-46.log] [testng] 08:44:46,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d6d7f0d - End of configuration. [testng] [2024-10-08 08:44:46,893] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim: [testng] 08:44:46,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:44:46,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:46,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_08-44-46.log] [testng] 08:44:46,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42852aca - End of configuration. [testng] [2024-10-08 08:44:47,131] [pool-1-thread-6] Initializing /data/venu/Kontrolle0011.lim: [testng] 08:44:47,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:44:47,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:47,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_08-44-47.log] [testng] 08:44:47,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad9b20d - End of configuration. [testng] [2024-10-08 08:44:47,374] [pool-1-thread-5] Initializing /data/venu/Kontrolle0004.lim: [testng] 08:44:47,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:44:47,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:47,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_08-44-47.log] [testng] 08:44:47,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@653f736d - End of configuration. [testng] [2024-10-08 08:44:47,624] [pool-1-thread-4] Initializing /data/venu/Kontrolle0014.lim: [testng] 08:44:47,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:44:47,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:47,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_08-44-47.log] [testng] 08:44:47,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340f8108 - End of configuration. [testng] [2024-10-08 08:44:47,842] [pool-1-thread-3] Initializing /data/venu/Kontrolle0003.lim: [testng] 08:44:47,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:44:47,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:47,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_08-44-47.log] [testng] 08:44:47,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6603c86e - End of configuration. [testng] [2024-10-08 08:44:48,100] [pool-1-thread-2] Initializing /data/venu/Kontrolle0002.lim: [testng] 08:44:48,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:44:48,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:48,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_08-44-48.log] [testng] 08:44:48,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14a30aa1 - End of configuration. [testng] [2024-10-08 08:44:52,929] [pool-1-thread-6] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-10-08 08:44:53,214] [pool-1-thread-2] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-10-08 08:44:53,491] [pool-1-thread-11] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-10-08 08:44:53,771] [pool-1-thread-12] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-10-08 08:44:54,030] [pool-1-thread-9] Initializing /data/venu/Kontrolle0001.lim: [testng] [2024-10-08 08:44:54,313] [pool-1-thread-5] Initializing /data/venu/Kontrolle0016.lim: [testng] [2024-10-08 08:44:54,570] [pool-1-thread-4] Initializing /data/venu/Kontrolle0005.lim: [testng] [2024-10-08 08:44:54,844] [pool-1-thread-3] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 seconds Finished: SUCCESS