![[Jenkins]](/jenkins/static/f5fa13f0/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 214 originally caused by: Started by upstream project "Trigger" build number 241 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins123811283277910897.sh + '[' samples = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33958_merge_ci -v /uod/idr/repos/curated/samples:/data -v /uod/idr-scratch/merge-ci/curated/samples:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 08:56:51,935 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:56:51,937 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 08:56:51,937 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:56:51,938 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:56:51,938 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:56:51,938 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:56:51,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:56:51,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:56:51,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:56:51,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:56:51,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:56:51,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:56:52,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:56:52,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:56:52,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:56:52,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:56:52,128 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:56:52,128 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:56:52,129 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:56:52,129 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:56:52,129 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 08:56:52,130 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 08:56:52,130 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-08 08:56:52,138] [main] java.version = 11.0.16 [testng] 08:56:52,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:56:52,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:52,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_08-56-52.log] [testng] 08:56:52,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-08 08:56:52,189] [main] testng.directory = /data [testng] [2024-10-08 08:56:52,189] [main] testng.configDirectory = /config [testng] [2024-10-08 08:56:52,198] [main] testng.multiplier = 1.0 [testng] [2024-10-08 08:56:52,199] [main] testng.in-memory = false [testng] [2024-10-08 08:56:52,200] [main] testng.allow-missing = false [testng] [2024-10-08 08:56:52,200] [main] user.language = en [testng] [2024-10-08 08:56:52,200] [main] user.country = ${user.country} [testng] [2024-10-08 08:56:52,200] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-08 08:58:00,545] [main] ---------------------------------------- [testng] [2024-10-08 08:58:00,546] [main] Total files: 164 [testng] [2024-10-08 08:58:00,546] [main] Scan time: 68.345 s (416 ms/file) [testng] [2024-10-08 08:58:00,546] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-08 08:59:13,275] [pool-1-thread-1] Initializing /data/openjpeg/Rome.bmp: [testng] 08:59:13,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:59:13,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:13,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_08-59-13.log] [testng] 08:59:13,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@477ccac5 - End of configuration. [testng] [2024-10-08 08:59:13,399] [pool-1-thread-12] Initializing /data/ome/EXPERIMENT38_w1FITC_t1.STK: [testng] 08:59:13,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:59:13,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:13,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_08-59-13.log] [testng] 08:59:13,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66a17e38 - End of configuration. [testng] [2024-10-08 08:59:14,441] [pool-1-thread-11] Initializing /data/openjpeg/FacadeERROPJW.bmp: [testng] 08:59:14,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:59:14,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:14,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_08-59-14.log] [testng] 08:59:14,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5921773c - End of configuration. [testng] [2024-10-08 08:59:14,577] [pool-1-thread-10] Initializing /data/openjpeg/FacadeERROPJ.bmp: [testng] 08:59:14,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:59:14,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:14,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_08-59-14.log] [testng] 08:59:14,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c233a3d - End of configuration. [testng] [2024-10-08 08:59:14,728] [pool-1-thread-9] Initializing /data/10-31 E1/10-31 E1.tif: [testng] 08:59:14,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:59:14,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:14,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_08-59-14.log] [testng] 08:59:14,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21fbe266 - End of configuration. [testng] [2024-10-08 08:59:15,808] [pool-1-thread-8] Initializing /data/openjpeg/Bretagne1.j2k: [testng] 08:59:15,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:59:15,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:15,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_08-59-15.log] [testng] 08:59:15,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@479c6828 - End of configuration. [testng] [2024-10-08 08:59:16,330] [pool-1-thread-7] Initializing /data/ome/nfat10x3 good2_D12_w3.TIF: [testng] 08:59:16,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:59:16,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:16,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_08-59-16.log] [testng] 08:59:16,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@404a7a7b - End of configuration. [testng] [2024-10-08 08:59:17,203] [pool-1-thread-6] Initializing /data/openjpeg/Cevennes2.bmp: [testng] 08:59:17,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:59:17,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:17,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_08-59-17.log] [testng] 08:59:17,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b77df52 - End of configuration. [testng] [2024-10-08 08:59:17,326] [pool-1-thread-5] Initializing /data/ome/PA-tub-wtmcakthurs-5_w1GFP_t1.STK: [testng] 08:59:17,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:59:17,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:17,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_08-59-17.log] [testng] 08:59:17,327 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63863370 - End of configuration. [testng] [2024-10-08 08:59:18,477] [pool-1-thread-4] Initializing /data/openjpeg/Cevennes1.j2k: [testng] 08:59:18,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:59:18,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:18,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_08-59-18.log] [testng] 08:59:18,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eaa94fd - End of configuration. [testng] [2024-10-08 08:59:18,934] [pool-1-thread-3] Initializing /data/mouse-kidney/mouse-kidney.lif: [testng] 08:59:18,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:59:18,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:18,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_08-59-18.log] [testng] 08:59:18,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24de24c7 - End of configuration. [testng] [2024-10-08 08:59:19,223] [pool-1-thread-2] Initializing /data/openjpeg/Cevennes2.jp2: [testng] 08:59:19,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:59:19,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:19,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_08-59-19.log] [testng] 08:59:19,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11cd6e91 - End of configuration. [testng] [2024-10-08 08:59:22,746] [pool-1-thread-6] Initializing /data/ome/n2_plate18_P24_w1.tif: [testng] [2024-10-08 08:59:24,268] [pool-1-thread-1] Initializing /data/ome/embryo.lsm: [testng] [2024-10-08 08:59:25,143] [pool-1-thread-3] Initializing /data/TAABA/TAABA.pattern: [testng] [2024-10-08 08:59:49,666] [pool-1-thread-10] Initializing /data/ome/cb_1.r3d: [testng] [2024-10-08 08:59:49,954] [pool-1-thread-11] Initializing /data/openjpeg/thumb_Cevennes1.jpg: [testng] [2024-10-08 08:59:50,837] [pool-1-thread-2] Initializing /data/ome/C1lowmusgfp.lsm: [testng] [2024-10-08 08:59:51,525] [pool-1-thread-8] Initializing /data/openjpeg/thumb_Cevennes2.jpg: [testng] [2024-10-08 08:59:51,653] [pool-1-thread-7] Initializing /data/ome/PA-SDS-RFP-CenB_w1GFP_t1.stk: [testng] [2024-10-08 08:59:52,330] [pool-1-thread-12] Initializing /data/openjpeg/thumb_Speedway.jpg: [testng] [2024-10-08 08:59:53,215] [pool-1-thread-9] Initializing /data/ome/nfat10x3 good2_D12_w1.TIF: [testng] [2024-10-08 08:59:54,485] [pool-1-thread-10] Initializing /data/openjpeg/Bretagne2.bmp: [testng] [2024-10-08 08:59:54,600] [pool-1-thread-11] Initializing /data/openjpeg/Cevennes1.ppm: [testng] [2024-10-08 08:59:55,123] [pool-1-thread-1] Initializing /data/openjpeg/Rome.jp2: [testng] [2024-10-08 08:59:56,198] [pool-1-thread-8] Initializing /data/ome/Cpharynxzs1.lsm: [testng] [2024-10-08 08:59:56,728] [pool-1-thread-12] Initializing /data/ome/compressed2ChZ.lsm: [testng] [2024-10-08 08:59:58,433] [pool-1-thread-6] Initializing /data/ome/tinyTest.d3d.dv: [testng] [2024-10-08 08:59:58,672] [pool-1-thread-11] Initializing /data/openjpeg/thumb_Rome.jpg: [testng] [2024-10-08 08:59:59,345] [pool-1-thread-2] Initializing /data/ome/tiffany.color.tiff: [testng] [2024-10-08 09:00:00,799] [pool-1-thread-10] Initializing /data/openjpeg/Bretagne2.j2k: [testng] [2024-10-08 09:00:01,453] [pool-1-thread-7] Initializing /data/ome/t1_pos1-0_5x.lsm: [testng] [2024-10-08 09:00:02,797] [pool-1-thread-6] Initializing /data/openjpeg/Bretagne2.ppm: [testng] [2024-10-08 09:00:02,907] [pool-1-thread-11] Initializing /data/ome/011B1_Morph.HTD: [testng] [2024-10-08 09:00:04,045] [pool-1-thread-9] Initializing /data/ome/654Atemp.stk: [testng] [2024-10-08 09:00:05,333] [pool-1-thread-1] Initializing /data/ome/anusgfpzs.lsm: [testng] [2024-10-08 09:00:06,084] [pool-1-thread-12] Initializing /data/ome/arwen0205_raw00201.pic: [testng] [2024-10-08 09:00:06,605] [pool-1-thread-4] Initializing /data/openjpeg/Cevennes1.bmp: [testng] [2024-10-08 09:00:06,731] [pool-1-thread-8] Initializing /data/openjpeg/thumb_Bretagne1.jpg: [testng] [2024-10-08 09:00:08,236] [pool-1-thread-6] Initializing /data/openjpeg/Facade.pnm: [testng] [2024-10-08 09:00:09,448] [pool-1-thread-7] Initializing /data/ome/worm.tiff: [testng] [2024-10-08 09:00:11,200] [pool-1-thread-8] Initializing /data/openjpeg/thumb_Bretagne2.jpg: [testng] [2024-10-08 09:00:11,531] [pool-1-thread-4] Initializing /data/ome/210502-0min-NFKB-4.r3d: [testng] [2024-10-08 09:00:12,218] [pool-1-thread-6] Initializing /data/ome/t0_pos1-0_5x.lsm: [testng] [2024-10-08 09:00:13,029] [pool-1-thread-2] Initializing /data/ome/Adultmidsection.lsm: [testng] [2024-10-08 09:00:13,701] [pool-1-thread-5] Initializing /data/kidney_TFl/kidney_TFl.pattern: [testng] [2024-10-08 09:00:15,090] [pool-1-thread-1] Initializing /data/openjpeg/Facade.bmp: [testng] [2024-10-08 09:00:16,616] [pool-1-thread-8] Initializing /data/ome/C1.lsm: [testng] [2024-10-08 09:00:17,750] [pool-1-thread-9] Initializing /data/openjpeg/Rome.ppm: [testng] [2024-10-08 09:00:17,874] [pool-1-thread-4] Initializing /data/openjpeg/Bretagne1.ppm: [testng] [2024-10-08 09:00:20,047] [pool-1-thread-9] Initializing /data/sdub/sdub.pattern: [testng] [2024-10-08 09:00:28,024] [pool-1-thread-4] Initializing /data/openjpeg/Cevennes2.ppm: [testng] [2024-10-08 09:00:28,132] [pool-1-thread-1] Initializing /data/ome/nfat10x3 good2_D12_w2.TIF: [testng] [2024-10-08 09:00:29,610] [pool-1-thread-2] Initializing /data/openjpeg/thumb_FacadeCOMP.jpg: [testng] [2024-10-08 09:00:29,749] [pool-1-thread-6] Initializing /data/openjpeg/thumb_facade.jpg: [testng] [2024-10-08 09:00:30,038] [pool-1-thread-7] Initializing /data/ome/CHOBI_d3d.dv: [testng] [2024-10-08 09:00:31,091] [pool-1-thread-4] Initializing /data/ome/Cmidmusgfp1.lsm: [testng] [2024-10-08 09:00:32,787] [pool-1-thread-8] Initializing /data/ome/C1midmusnorm.lsm: [testng] [2024-10-08 09:00:34,304] [pool-1-thread-7] Initializing /data/openjpeg/Bretagne1.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 3127, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 53 seconds Finished: SUCCESS