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Started by upstream project "BIOFORMATS-test-repo" build number 214 originally caused by: Started by upstream project "Trigger" build number 241 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins970955296038218461.sh + '[' targa = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33966_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 09:02:23,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:02:23,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 09:02:23,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:02:23,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:02:23,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:02:23,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:02:23,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:02:23,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:02:23,044 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:02:23,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:02:23,045 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:02:23,045 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:02:23,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:02:23,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:02:23,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:02:23,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:02:23,254 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:02:23,255 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:02:23,255 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:02:23,255 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:02:23,255 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 09:02:23,256 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 09:02:23,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 212 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-08 09:02:23,265] [main] java.version = 11.0.16 [testng] 09:02:23,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:02:23,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:23,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_09-02-23.log] [testng] 09:02:23,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-08 09:02:23,313] [main] testng.directory = /data [testng] [2024-10-08 09:02:23,314] [main] testng.configDirectory = /config [testng] [2024-10-08 09:02:23,323] [main] testng.multiplier = 1.0 [testng] [2024-10-08 09:02:23,324] [main] testng.in-memory = false [testng] [2024-10-08 09:02:23,325] [main] testng.allow-missing = false [testng] [2024-10-08 09:02:23,325] [main] user.language = en [testng] [2024-10-08 09:02:23,325] [main] user.country = ${user.country} [testng] [2024-10-08 09:02:23,325] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-08 09:02:23,992] [main] ---------------------------------------- [testng] [2024-10-08 09:02:23,993] [main] Total files: 21 [testng] [2024-10-08 09:02:23,993] [main] Scan time: 0.667 s (31 ms/file) [testng] [2024-10-08 09:02:23,993] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-08 09:02:29,859] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA: [testng] 09:02:29,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:02:29,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:29,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_09-02-29.log] [testng] 09:02:29,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ae1ed54 - End of configuration. [testng] [2024-10-08 09:02:30,147] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA: [testng] 09:02:30,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:02:30,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:30,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_09-02-30.log] [testng] 09:02:30,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b2ce26d - End of configuration. [testng] [2024-10-08 09:02:30,439] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 09:02:30,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:02:30,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:30,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_09-02-30.log] [testng] 09:02:30,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5446108e - End of configuration. [testng] [2024-10-08 09:02:30,633] [pool-1-thread-10] Initializing /data/samples/FLAG_T16.TGA: [testng] 09:02:30,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:02:30,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:30,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_09-02-30.log] [testng] 09:02:30,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63047687 - End of configuration. [testng] [2024-10-08 09:02:30,874] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA: [testng] 09:02:30,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:02:30,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:30,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_09-02-30.log] [testng] 09:02:30,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4905d351 - End of configuration. [testng] [2024-10-08 09:02:31,132] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA: [testng] 09:02:31,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:02:31,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:31,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_09-02-31.log] [testng] 09:02:31,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55c6db80 - End of configuration. [testng] [2024-10-08 09:02:31,396] [pool-1-thread-7] Initializing /data/samples/UBW8.TGA: [testng] 09:02:31,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:02:31,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:31,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_09-02-31.log] [testng] 09:02:31,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@772ef1b4 - End of configuration. [testng] [2024-10-08 09:02:31,596] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 09:02:31,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:02:31,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:31,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_09-02-31.log] [testng] 09:02:31,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@349d5edb - End of configuration. [testng] [2024-10-08 09:02:31,848] [pool-1-thread-5] Initializing /data/samples/XING_B24.TGA: [testng] 09:02:31,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:02:31,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:31,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_09-02-31.log] [testng] 09:02:31,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3024f2d7 - End of configuration. [testng] [2024-10-08 09:02:32,073] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 09:02:32,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:02:32,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:32,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_09-02-32.log] [testng] 09:02:32,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31ba78a1 - End of configuration. [testng] [2024-10-08 09:02:32,307] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: [testng] 09:02:32,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:02:32,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:32,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_09-02-32.log] [testng] 09:02:32,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340f8108 - End of configuration. [testng] [2024-10-08 09:02:32,489] [pool-1-thread-2] Initializing /data/samples/FLAG_B32.TGA: [testng] 09:02:32,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:02:32,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:32,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_09-02-32.log] [testng] 09:02:32,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60222b10 - End of configuration. [testng] [2024-10-08 09:02:36,153] [pool-1-thread-8] Initializing /data/samples/UTC16.TGA: [testng] [2024-10-08 09:02:36,284] [pool-1-thread-6] Initializing /data/samples/XING_B32.TGA: [testng] [2024-10-08 09:02:36,396] [pool-1-thread-4] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-10-08 09:02:36,505] [pool-1-thread-12] Initializing /data/samples/UCM8.TGA: [testng] [2024-10-08 09:02:36,598] [pool-1-thread-9] Initializing /data/samples/CBW8.TGA: [testng] [2024-10-08 09:02:36,761] [pool-1-thread-2] Initializing /data/samples/XING_T16.TGA: [testng] [2024-10-08 09:02:37,027] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA: [testng] [2024-10-08 09:02:37,234] [pool-1-thread-1] Initializing /data/samples/UTC24.TGA: [testng] [2024-10-08 09:02:37,403] [pool-1-thread-5] Initializing /data/samples/XING_T32.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 seconds Finished: SUCCESS