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Started by upstream project "BIOFORMATS-test-repo" build number 214 originally caused by: Started by upstream project "Trigger" build number 241 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8211287673629655385.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34013_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 10:19:07,215 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:19:07,217 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 10:19:07,217 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:19:07,218 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:19:07,218 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:19:07,219 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:19:07,219 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:19:07,219 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:19:07,219 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:19:07,220 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:19:07,220 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:19:07,221 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:19:07,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:19:07,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:19:07,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:19:07,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:19:07,401 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:19:07,401 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:19:07,401 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:19:07,402 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:19:07,402 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 10:19:07,403 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 10:19:07,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-08 10:19:07,411] [main] java.version = 11.0.16 [testng] 10:19:07,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:19:07,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:07,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_10-19-07.log] [testng] 10:19:07,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-08 10:19:07,456] [main] testng.directory = /data [testng] [2024-10-08 10:19:07,456] [main] testng.configDirectory = /config [testng] [2024-10-08 10:19:07,465] [main] testng.multiplier = 1.0 [testng] [2024-10-08 10:19:07,466] [main] testng.in-memory = false [testng] [2024-10-08 10:19:07,467] [main] testng.allow-missing = false [testng] [2024-10-08 10:19:07,467] [main] user.language = en [testng] [2024-10-08 10:19:07,467] [main] user.country = ${user.country} [testng] [2024-10-08 10:19:07,467] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-08 11:58:44,058] [main] ---------------------------------------- [testng] [2024-10-08 11:58:44,058] [main] Total files: 7329 [testng] [2024-10-08 11:58:44,059] [main] Scan time: 5976.591 s (815 ms/file) [testng] [2024-10-08 11:58:44,059] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-08 15:32:02,472] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] 15:32:02,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 15:32:02,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:32:02,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_15-32-02.log] [testng] 15:32:02,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f5aeaf1 - End of configuration. [testng] [2024-10-08 15:33:32,273] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] 15:33:32,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 15:33:32,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:33:32,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_15-33-32.log] [testng] 15:33:32,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@107aabab - End of configuration. [testng] [2024-10-08 15:33:59,401] [pool-1-thread-11] Initializing /data/jae/RGB_s34.tif: [testng] 15:33:59,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 15:33:59,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:33:59,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_15-33-59.log] [testng] 15:33:59,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24cc9590 - End of configuration. [testng] [2024-10-08 15:34:28,494] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] 15:34:28,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 15:34:28,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:34:28,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_15-34-28.log] [testng] 15:34:28,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@557ff4dc - End of configuration. [testng] [2024-10-08 15:35:03,345] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] 15:35:03,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 15:35:03,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:35:03,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_15-35-03.log] [testng] 15:35:03,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d773ce1 - End of configuration. [testng] [2024-10-08 15:35:23,503] [pool-1-thread-9] Used files list does not include base file [testng] [2024-10-08 15:35:23,505] [pool-1-thread-8] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] 15:35:23,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 15:35:23,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:35:23,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_15-35-23.log] [testng] 15:35:23,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d114666 - End of configuration. [testng] [2024-10-08 15:35:32,901] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 15:35:32,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 15:35:32,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:35:32,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_15-35-32.log] [testng] 15:35:32,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e0a8fcb - End of configuration. [testng] [2024-10-08 15:35:50,782] [pool-1-thread-6] Initializing /data/samples/zseries.stk: [testng] 15:35:50,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 15:35:50,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:35:50,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_15-35-50.log] [testng] 15:35:50,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bcd3408 - End of configuration. [testng] [2024-10-08 15:35:58,967] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] 15:35:58,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 15:35:58,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:35:58,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_15-35-58.log] [testng] 15:35:58,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d8052cd - End of configuration. [testng] [2024-10-08 15:36:43,457] [pool-1-thread-4] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] 15:36:43,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 15:36:43,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:36:43,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_15-36-43.log] [testng] 15:36:43,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@513b55f2 - End of configuration. [testng] [2024-10-08 15:36:51,609] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] 15:36:51,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 15:36:51,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:36:51,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_15-36-51.log] [testng] 15:36:51,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@323d20d2 - End of configuration. [testng] [2024-10-08 15:36:57,197] [pool-1-thread-2] Initializing /data/graham/G_Wright raw.stk: [testng] 15:36:57,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 15:36:57,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:36:57,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_15-36-57.log] [testng] 15:36:57,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2122c624 - End of configuration. [testng] [2024-10-08 15:37:56,020] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-10-08 15:38:12,725] [pool-1-thread-3] Used files list does not include base file [testng] [2024-10-08 15:38:41,947] [pool-1-thread-4] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-10-08 15:39:03,001] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-10-08 15:39:21,526] [pool-1-thread-2] Initializing /data/steve/Experiment2.stk: [testng] [2024-10-08 15:39:35,337] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-10-08 15:39:51,916] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-10-08 15:40:05,138] [pool-1-thread-10] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-10-08 15:40:55,389] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-10-08 15:41:48,121] [pool-1-thread-7] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-10-08 15:42:31,329] [pool-1-thread-2] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-10-08 15:42:47,309] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-10-08 15:43:00,070] [pool-1-thread-8] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-10-08 15:44:42,286] [pool-1-thread-2] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-10-08 15:45:04,890] [pool-1-thread-11] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-10-08 15:45:15,199] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-10-08 15:45:40,780] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] [2024-10-08 15:46:36,756] [pool-1-thread-2] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-10-08 15:47:00,343] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-08 15:47:17,954] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-08 15:47:41,494] [pool-1-thread-12] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-10-08 15:49:09,277] [pool-1-thread-11] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-10-08 15:50:48,980] [pool-1-thread-2] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-10-08 15:52:15,577] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-10-08 15:52:26,074] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-10-08 15:52:36,241] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-10-08 15:52:50,945] [pool-1-thread-3] Used files list does not include base file [testng] [2024-10-08 15:52:50,947] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-10-08 15:53:14,780] [pool-1-thread-9] Used files list does not include base file [testng] [2024-10-08 15:53:14,782] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-10-08 15:53:41,662] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-10-08 15:54:07,990] [pool-1-thread-12] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-10-08 15:54:22,984] [pool-1-thread-6] Initializing /data/dave/Z Series.stk: [testng] [2024-10-08 15:54:43,184] [pool-1-thread-1] Initializing /data/josh/2101to600f.stk: [testng] [2024-10-08 15:57:33,758] [pool-1-thread-5] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-10-08 15:58:07,752] [pool-1-thread-8] Initializing /data/josh/2101to800.stk: [testng] [2024-10-08 15:59:38,234] [pool-1-thread-4] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-10-08 16:00:07,149] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-08 16:00:30,927] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-10-08 16:00:35,016] [pool-1-thread-12] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-10-08 16:01:02,279] [pool-1-thread-6] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-10-08 16:01:40,539] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-10-08 16:02:12,300] [pool-1-thread-9] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-10-08 16:02:29,729] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-10-08 16:03:04,066] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-10-08 16:03:27,615] [pool-1-thread-6] Used files list does not include base file [testng] [2024-10-08 16:03:45,526] [pool-1-thread-4] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-10-08 16:04:05,619] [pool-1-thread-11] Initializing /data/thomas/test.tif: [testng] [2024-10-08 16:04:24,866] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-10-08 16:05:07,158] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-10-08 16:05:45,712] [pool-1-thread-3] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-10-08 16:06:16,151] [pool-1-thread-11] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-10-08 16:06:35,031] [pool-1-thread-4] Initializing /data/samples/10xcalib.stk: [testng] [2024-10-08 16:06:54,314] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-10-08 16:07:24,698] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-10-08 16:07:43,330] [pool-1-thread-5] Used files list does not include base file [testng] [2024-10-08 16:07:43,477] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-10-08 16:08:09,582] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-10-08 16:08:30,436] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-10-08 16:09:03,731] [pool-1-thread-4] Initializing /data/qa-16915/m-01.tif: [testng] [2024-10-08 16:09:41,333] [pool-1-thread-11] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-10-08 16:10:21,456] [pool-1-thread-9] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-10-08 16:10:57,432] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-10-08 16:11:14,608] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-10-08 16:11:49,775] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-10-08 16:12:15,482] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-10-08 16:12:59,974] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-10-08 16:13:24,868] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-10-08 16:13:42,281] [pool-1-thread-8] Used files list does not include base file [testng] [2024-10-08 16:13:42,284] [pool-1-thread-10] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-10-08 16:14:21,746] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-10-08 16:14:42,396] [pool-1-thread-12] Used files list does not include base file [testng] [2024-10-08 16:14:50,119] [pool-1-thread-4] Initializing /data/samples/diatoms3d.stk: [testng] [2024-10-08 16:15:36,405] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-10-08 16:15:51,909] [pool-1-thread-5] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-10-08 16:16:07,824] [pool-1-thread-11] Initializing /data/grant/X.STK: [testng] [2024-10-08 16:16:33,384] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-10-08 16:17:45,779] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-10-08 16:18:39,989] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-10-08 16:18:51,976] [pool-1-thread-5] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-10-08 16:19:33,319] [pool-1-thread-3] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-10-08 16:19:46,355] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-08 16:20:01,631] [pool-1-thread-1] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-10-08 16:20:52,813] [pool-1-thread-5] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-10-08 16:22:41,425] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-10-08 16:23:04,011] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-10-08 16:24:17,346] [pool-1-thread-6] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-10-08 16:24:32,113] [pool-1-thread-11] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-10-08 16:26:04,923] [pool-1-thread-10] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-10-08 16:27:35,974] [pool-1-thread-9] Initializing /data/josh/2101to600e.stk: [testng] [2024-10-08 16:28:47,048] [pool-1-thread-4] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-10-08 16:29:37,430] [pool-1-thread-1] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-10-08 16:30:04,018] [pool-1-thread-6] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-10-08 16:35:17,713] [pool-1-thread-8] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-10-08 16:35:34,573] [pool-1-thread-12] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-10-08 16:35:48,945] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-08 16:37:25,187] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-10-08 16:38:45,432] [pool-1-thread-8] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-10-08 16:39:15,005] [pool-1-thread-4] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-10-08 16:39:45,216] [pool-1-thread-1] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-10-08 16:41:12,136] [pool-1-thread-4] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-10-08 16:45:02,123] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-08 16:45:35,543] [pool-1-thread-1] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-10-08 16:46:04,355] [pool-1-thread-9] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-10-08 16:47:39,843] [pool-1-thread-9] Initializing /data/josh/2101to400astk.stk: [testng] [2024-10-08 16:51:16,612] [pool-1-thread-8] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-10-08 16:52:35,740] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] [2024-10-08 16:53:16,899] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-10-08 16:53:38,735] [pool-1-thread-3] Used files list does not include base file [testng] [2024-10-08 16:53:43,313] [pool-1-thread-10] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-10-08 16:54:23,872] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-10-08 16:54:36,889] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-08 16:55:08,835] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-10-08 16:55:35,195] [pool-1-thread-12] Used files list does not include base file [testng] [2024-10-08 16:56:39,162] [pool-1-thread-1] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-10-08 16:57:02,921] [pool-1-thread-8] Initializing /data/steve/Experiment2.tif: [testng] [2024-10-08 16:57:50,068] [pool-1-thread-7] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-10-08 16:58:27,140] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-10-08 16:59:09,454] [pool-1-thread-1] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-10-08 17:00:56,782] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-10-08 17:01:43,292] [pool-1-thread-12] Initializing /data/aaron/metamorph.stk: [testng] [2024-10-08 17:02:40,077] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-08 17:03:46,744] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-10-08 17:04:05,496] [pool-1-thread-8] Used files list does not include base file [testng] [2024-10-08 17:04:12,419] [pool-1-thread-12] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-10-08 17:05:18,487] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-08 17:09:47,751] [pool-1-thread-3] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-10-08 17:11:52,403] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-10-08 17:12:29,669] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-10-08 17:12:50,741] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-10-08 17:13:38,571] [pool-1-thread-12] Used files list does not include base file [testng] [2024-10-08 17:13:38,604] [pool-1-thread-7] Initializing /data/samples/10xcalib.tif: [testng] [2024-10-08 17:15:01,015] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-10-08 17:15:28,442] [pool-1-thread-9] Used files list does not include base file [testng] [2024-10-08 17:15:38,103] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-10-08 17:22:21,779] [pool-1-thread-3] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-10-08 17:24:00,918] [pool-1-thread-10] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-10-08 17:25:02,460] [pool-1-thread-6] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-10-08 17:25:26,311] [pool-1-thread-8] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] 17:34:31,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 17:34:31,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:34:31,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_17-34-31.log] [testng] 17:34:31,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4877ae1d - End of configuration. [testng] [2024-10-08 18:21:03,419] [pool-1-thread-3] Initializing /data/josh/2101to600astk.stk: [testng] [2024-10-08 18:24:11,563] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-10-08 18:24:23,991] [pool-1-thread-6] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-10-08 18:24:35,729] [pool-1-thread-9] Initializing /data/qa-16915/m-02.tif: [testng] [2024-10-08 18:24:46,884] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-10-08 18:24:57,282] [pool-1-thread-5] Used files list does not include base file [testng] [2024-10-08 18:25:03,240] [pool-1-thread-6] Initializing /data/cumol-test-series/23.001: [testng] [2024-10-08 18:25:51,138] [pool-1-thread-10] Initializing /data/qa-16915/m-04.tif: [testng] [2024-10-08 18:26:05,849] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-10-08 18:26:16,185] [pool-1-thread-2] Initializing /data/jerome/deconv.STK: [testng] [2024-10-08 18:26:48,428] [pool-1-thread-12] Initializing /data/thomas/t_test2001.tif: [testng] [2024-10-08 18:27:06,196] [pool-1-thread-10] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-10-08 18:27:18,823] [pool-1-thread-2] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-10-08 18:27:30,872] [pool-1-thread-9] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-10-08 18:27:58,344] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-10-08 18:28:15,984] [pool-1-thread-10] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-10-08 18:28:29,741] [pool-1-thread-2] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-10-08 18:34:51,603] [pool-1-thread-6] Initializing /data/alex/Selected FITC.stk: [testng] [2024-10-08 18:35:02,088] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-10-08 18:35:10,766] [pool-1-thread-10] Initializing /data/david/tl4.tif: [testng] [2024-10-08 18:35:19,801] [pool-1-thread-1] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-10-08 18:35:46,954] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-10-08 18:36:11,211] [pool-1-thread-7] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-10-08 18:36:22,174] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-10-08 18:36:45,746] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-10-08 18:36:57,375] [pool-1-thread-9] Used files list does not include base file [testng] [2024-10-08 18:37:03,615] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-10-08 18:37:15,195] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-10-08 18:37:23,353] [pool-1-thread-7] Initializing /data/qa-16887/m-01.tif: [testng] [2024-10-08 18:37:34,304] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-10-08 18:38:29,820] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-10-08 18:38:45,107] [pool-1-thread-5] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-10-08 18:39:01,371] [pool-1-thread-7] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-10-08 18:39:18,724] [pool-1-thread-1] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-10-08 18:39:27,883] [pool-1-thread-12] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-10-08 18:39:38,912] [pool-1-thread-5] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-10-08 18:40:12,897] [pool-1-thread-10] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-10-08 18:40:19,443] [pool-1-thread-12] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-10-08 18:40:32,468] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-10-08 18:40:46,913] [pool-1-thread-5] Used files list does not include base file [testng] [2024-10-08 18:40:58,499] [pool-1-thread-1] Initializing /data/samples/zser24.stk: [testng] [2024-10-08 18:41:14,186] [pool-1-thread-10] Initializing /data/ascb/golgi marker.tif: [testng] [2024-10-08 18:41:22,148] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-10-08 18:41:42,722] [pool-1-thread-1] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-10-08 18:42:07,639] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-08 18:42:18,425] [pool-1-thread-12] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-10-08 18:42:24,747] [pool-1-thread-7] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-10-08 18:42:31,832] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-10-08 18:42:43,022] [pool-1-thread-9] Used files list does not include base file [testng] [2024-10-08 18:43:19,577] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-08 18:43:32,072] [pool-1-thread-7] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-10-08 18:43:56,749] [pool-1-thread-1] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-10-08 18:51:29,368] [pool-1-thread-3] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-10-08 18:51:48,841] [pool-1-thread-7] Initializing /data/ascb/mt aim.tif: [testng] [2024-10-08 18:52:00,287] [pool-1-thread-10] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-10-08 18:52:10,296] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-10-08 18:52:31,050] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-10-08 18:52:43,254] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-08 18:53:00,545] [pool-1-thread-10] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-10-08 18:53:05,863] [pool-1-thread-5] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-10-08 18:53:31,474] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-08 18:53:47,008] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-10-08 18:54:39,005] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-08 18:55:10,746] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-10-08 18:55:42,916] [pool-1-thread-12] Initializing /data/josh/2101to600b.stk: [testng] [2024-10-08 18:56:30,054] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-10-08 18:57:09,241] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-10-08 18:57:26,022] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-10-08 18:57:34,595] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-10-08 18:58:03,482] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-10-08 18:58:10,956] [pool-1-thread-9] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-10-08 18:58:18,154] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-10-08 18:58:44,273] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-10-08 18:58:51,462] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] 21:05:52,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 21:05:52,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:05:52,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_21-05-52.log] [testng] 21:05:52,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@378314b - End of configuration. Build was aborted Calling Pipeline was cancelled Finished: ABORTED