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Started by upstream project "BIOFORMATS-test-repo" build number 215 originally caused by: Started by upstream project "Trigger" build number 242 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins10050866321377627989.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34051_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:37,244 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:37,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:21:37,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:37,246 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:37,246 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:37,246 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:37,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:37,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:37,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:37,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:37,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:37,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:37,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:37,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:37,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:37,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:37,430 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:37,430 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:37,430 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:37,430 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:37,430 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:21:37,431 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:21:37,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-09 01:21:37,440] [main] java.version = 17.0.2 [testng] 01:21:37,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:37,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:37,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-09_01-21-37.log] [testng] 01:21:37,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-09 01:21:37,485] [main] testng.directory = /data [testng] [2024-10-09 01:21:37,485] [main] testng.configDirectory = /config [testng] [2024-10-09 01:21:37,493] [main] testng.multiplier = 1.0 [testng] [2024-10-09 01:21:37,494] [main] testng.in-memory = false [testng] [2024-10-09 01:21:37,494] [main] testng.allow-missing = false [testng] [2024-10-09 01:21:37,494] [main] user.language = en [testng] [2024-10-09 01:21:37,494] [main] user.country = ${user.country} [testng] [2024-10-09 01:21:37,494] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-09 01:22:52,975] [main] ---------------------------------------- [testng] [2024-10-09 01:22:52,975] [main] Total files: 4426 [testng] [2024-10-09 01:22:52,976] [main] Scan time: 75.481 s (17 ms/file) [testng] [2024-10-09 01:22:52,976] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-09 01:38:02,190] [pool-1-thread-1] Initializing /data/wayne/apple.tif: [testng] 01:38:02,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:38:02,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:02,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-09_01-38-02.log] [testng] 01:38:02,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@799a24e6 - End of configuration. [testng] [2024-10-09 01:38:02,865] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z060.tif: [testng] 01:38:02,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:38:02,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:02,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-09_01-38-02.log] [testng] 01:38:02,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d45101f - End of configuration. [testng] [2024-10-09 01:38:03,771] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] 01:38:03,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:38:03,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:03,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-09_01-38-03.log] [testng] 01:38:03,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a86ccb9 - End of configuration. [testng] [2024-10-09 01:38:04,601] [pool-1-thread-10] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] 01:38:04,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:38:04,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:04,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-09_01-38-04.log] [testng] 01:38:04,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18d7faff - End of configuration. [testng] [2024-10-09 01:38:05,295] [pool-1-thread-9] Initializing /data/curtis/test1.tiff: [testng] 01:38:05,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:38:05,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:05,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-09_01-38-05.log] [testng] 01:38:05,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@726930d2 - End of configuration. [testng] [2024-10-09 01:38:05,993] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z005.tif: [testng] 01:38:05,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:38:05,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:05,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-09_01-38-05.log] [testng] 01:38:05,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f76a7a - End of configuration. [testng] [2024-10-09 01:38:06,607] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x32.tiff: [testng] 01:38:06,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:38:06,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:06,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-09_01-38-06.log] [testng] 01:38:06,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1111f340 - End of configuration. [testng] [2024-10-09 01:38:07,380] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] 01:38:07,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:38:07,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:07,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-09_01-38-07.log] [testng] 01:38:07,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52546de0 - End of configuration. [testng] [2024-10-09 01:38:07,903] [pool-1-thread-5] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] 01:38:07,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:38:07,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:07,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-09_01-38-07.log] [testng] 01:38:07,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41d9c939 - End of configuration. [testng] [2024-10-09 01:38:08,580] [pool-1-thread-4] Initializing /data/josiah/cell-Z34.C0.tiff: [testng] 01:38:08,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:38:08,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:08,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-09_01-38-08.log] [testng] 01:38:08,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c16187b - End of configuration. [testng] [2024-10-09 01:38:09,289] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] 01:38:09,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:38:09,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:09,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-09_01-38-09.log] [testng] 01:38:09,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c4ec6e - End of configuration. [testng] [2024-10-09 01:38:09,942] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] 01:38:09,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:38:09,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:09,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-09_01-38-09.log] [testng] 01:38:09,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@159fb3d2 - End of configuration. [testng] [2024-10-09 01:38:16,654] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-10-09 01:38:17,338] [pool-1-thread-7] Initializing /data/wayne/mBoeglin_lzw/mm7.1.2.0_07.tif: [testng] [2024-10-09 01:38:17,728] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-10-09 01:38:18,192] [pool-1-thread-8] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-10-09 01:38:18,554] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2024-10-09 01:38:18,995] [pool-1-thread-3] Initializing /data/michael/WonkyTrafficLight.tiff: [testng] [2024-10-09 01:38:19,458] [pool-1-thread-6] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-10-09 01:38:24,469] [pool-1-thread-10] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] [2024-10-09 01:38:25,050] [pool-1-thread-12] Initializing /data/josiah/cell-Z28.C0.tiff: [testng] [2024-10-09 01:38:25,647] [pool-1-thread-11] Initializing /data/curtis/imagesEight.tiff: [testng] [2024-10-09 01:38:26,301] [pool-1-thread-2] Initializing /data/martin/head.tif: [testng] [2024-10-09 01:38:27,736] [pool-1-thread-5] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-10-09 01:38:31,606] [pool-1-thread-7] Initializing /data/samples/melissa/imagej-last-ifd/Rat_Hippocampal_Neuron.tif: [testng] [2024-10-09 01:38:33,040] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z015.tif: [testng] [2024-10-09 01:38:33,600] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] [2024-10-09 01:38:34,124] [pool-1-thread-3] Initializing /data/kevino/_BF_00004.tif: [testng] [2024-10-09 01:38:34,634] [pool-1-thread-2] Initializing /data/wayne/Rockies-48bit-rgb.tif: [testng] [2024-10-09 01:38:35,112] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-10-09 01:38:35,531] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x16.tiff: [testng] [2024-10-09 01:38:35,911] [pool-1-thread-1] Initializing /data/public/cellprofiler/fruit-fly-cells/POS218.pattern/POS218.pattern: [testng] [2024-10-09 01:38:37,848] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-10-09 01:38:38,281] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-10-09 01:38:38,724] [pool-1-thread-10] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-10-09 01:38:42,817] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z017.tif: [testng] [2024-10-09 01:38:43,927] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0203.TIF: [testng] [2024-10-09 01:38:44,515] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z043.tif: [testng] [2024-10-09 01:38:44,933] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z031.tif: [testng] [2024-10-09 01:38:45,301] [pool-1-thread-8] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-10-09 01:38:45,834] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-02.tiff: [testng] [2024-10-09 01:38:46,466] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z029.tif: [testng] [2024-10-09 01:38:47,114] [pool-1-thread-11] Initializing /data/qa-4745/LIBPB476_Figure 1_H_NA_21879.tiff: [testng] [2024-10-09 01:38:47,750] [pool-1-thread-2] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-10-09 01:38:48,011] [pool-1-thread-5] Initializing /data/josh/NESb_C2_TP8.tiff: [testng] [2024-10-09 01:38:52,769] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo.tif: [testng] [2024-10-09 01:38:54,111] [pool-1-thread-2] Initializing /data/public/condensation/A1.pattern2.tif: [testng] [2024-10-09 01:38:55,067] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-10-09 01:38:56,039] [pool-1-thread-9] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2024-10-09 01:38:56,857] [pool-1-thread-4] Initializing /data/boguslaw/Arabidopsis_large.tif: [testng] [2024-10-09 01:38:57,614] [pool-1-thread-8] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-10-09 01:38:58,323] [pool-1-thread-10] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-10-09 01:38:58,973] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z001.tif: [testng] [2024-10-09 01:38:59,508] [pool-1-thread-5] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-10-09 01:39:00,081] [pool-1-thread-11] Initializing /data/josh/NESb_C2_TP10.tiff: [testng] [2024-10-09 01:39:01,945] [pool-1-thread-6] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-10-09 01:39:05,884] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x64.tiff: [testng] [2024-10-09 01:39:06,829] [pool-1-thread-7] Initializing 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01:47:40,273] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern7.tif: [testng] [2024-10-09 01:47:40,529] [pool-1-thread-6] Initializing /data/ascb/FND-25_PaladeGroup_4800.tif: [testng] [2024-10-09 01:47:40,737] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0255.TIF: [testng] [2024-10-09 01:47:43,612] [pool-1-thread-2] Initializing /data/tom-kazimiers/crop_two_chan.tiff: [testng] [2024-10-09 01:47:44,013] [pool-1-thread-4] Initializing /data/qa-4833/cjw_tiffs/23273992_Figure 6_NA_NA_22159.TIF: [testng] [2024-10-09 01:47:44,515] [pool-1-thread-5] Initializing /data/ascb/CYT-146_Fader_Distribution.tif: [testng] [2024-10-09 01:47:45,128] [pool-1-thread-8] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-10-09 01:47:45,560] [pool-1-thread-9] Initializing /data/caroline/1828_L2_series_1.tif: [testng] [2024-10-09 01:47:45,858] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z034.tif: [testng] [2024-10-09 01:47:46,199] [pool-1-thread-3] 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[testng] [2024-10-09 01:50:06,370] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-10-09 01:50:06,897] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x64.tiff: [testng] [2024-10-09 01:50:07,371] [pool-1-thread-8] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs012.TIF: [testng] [2024-10-09 01:50:07,704] [pool-1-thread-12] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-10-09 01:50:08,026] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z055.tif: [testng] [2024-10-09 01:50:08,332] [pool-1-thread-5] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-10-09 01:50:08,631] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-10-09 01:50:10,895] [pool-1-thread-1] Initializing /data/josiah/cell-Z25.C0.tiff: [testng] [2024-10-09 01:50:11,823] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z018.tif: 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01:50:30,610] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [2024-10-09 01:50:31,630] [pool-1-thread-1] Initializing /data/ascb/FND-1_PorterClaudeFullamFirst_4800.tif: [testng] [2024-10-09 01:50:32,288] [pool-1-thread-7] Initializing /data/ascb/bad/FND-16_FawcettPrincipal_4800.tif: [testng] [2024-10-09 01:50:33,092] [pool-1-thread-8] Initializing /data/josiah/cell-Z0.C1.tiff: [testng] [2024-10-09 01:50:33,570] [pool-1-thread-9] Initializing /data/julien/RobertOrti.TIF: [testng] [2024-10-09 01:50:33,972] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-10-09 01:50:34,325] [pool-1-thread-12] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-10-09 01:50:34,812] [pool-1-thread-4] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs000.TIF: [testng] [2024-10-09 01:50:35,189] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-05.tiff: 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Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-10-09 01:50:50,020] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z001.tif: [testng] [2024-10-09 01:50:51,308] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-10-09 01:50:51,894] [pool-1-thread-12] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-10-09 01:50:52,360] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0221.TIF: [testng] [2024-10-09 01:50:52,676] [pool-1-thread-5] Initializing /data/misc/mri-old.mov: [testng] [2024-10-09 01:50:52,769] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z030.tif: [testng] [2024-10-09 01:50:53,180] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0216.TIF: [testng] [2024-10-09 01:50:53,539] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-10-09 01:50:53,834] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] [2024-10-09 01:50:55,759] [pool-1-thread-5] Initializing /data/josiah/cell-Z32.C1.tiff: [testng] [2024-10-09 01:50:56,100] [pool-1-thread-11] Initializing /data/public/libtiff/quad-tile.tif: [testng] [2024-10-09 01:50:56,656] [pool-1-thread-7] Initializing /data/tobias/test002_1.tif: [testng] [2024-10-09 01:50:57,446] [pool-1-thread-2] Initializing /data/josiah/cell-Z39.C0.tiff: [testng] [2024-10-09 01:50:58,840] [pool-1-thread-3] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-10-09 01:50:59,249] [pool-1-thread-4] Initializing /data/public/condensation/C4.pattern9.tif: [testng] [2024-10-09 01:50:59,901] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C1_Z032.tif: [testng] [2024-10-09 01:51:00,266] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z024.tif: [testng] [2024-10-09 01:51:00,607] [pool-1-thread-8] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs001.TIF: [testng] [2024-10-09 01:51:00,931] [pool-1-thread-1] Initializing 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[testng] [2024-10-09 01:51:08,193] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-10-09 01:51:09,078] [pool-1-thread-5] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-10-09 01:51:09,366] [pool-1-thread-8] Initializing /data/curtis/map/the-quick: [testng] [2024-10-09 01:51:09,776] [pool-1-thread-1] Initializing /data/ascb/FND-22_FawcettLongitudinalMammalian_4800.tif: [testng] [2024-10-09 01:51:12,165] [pool-1-thread-11] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] [2024-10-09 01:51:12,709] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z006.tif: [testng] [2024-10-09 01:51:13,300] [pool-1-thread-7] Initializing /data/josiah/cell-Z30.C0.tiff: [testng] [2024-10-09 01:51:13,859] [pool-1-thread-12] Initializing /data/ascb/CYT-50_FriendSecretoryPairA_4800.tif: [testng] [2024-10-09 01:51:14,305] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x48.tiff: [testng] [2024-10-09 01:51:14,782] [pool-1-thread-3] Initializing /data/public/libtiff/cramps-tile.tif: [testng] [2024-10-09 01:51:15,044] [pool-1-thread-10] Initializing /data/damian/12m.tiff: [testng] [2024-10-09 01:51:15,366] [pool-1-thread-9] Initializing /data/josiah/cell-Z30.C1.tiff: [testng] [2024-10-09 01:51:15,660] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z019.tif: [testng] [2024-10-09 01:51:15,969] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x32.tiff: [testng] [2024-10-09 01:51:16,284] [pool-1-thread-5] Initializing /data/brian/Alx-488-pk.tif: [testng] [2024-10-09 01:51:19,263] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-10-09 01:51:19,668] [pool-1-thread-7] Initializing /data/edward/TestDoc2.tif: [testng] [2024-10-09 01:51:20,297] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z001.tif: [testng] [2024-10-09 01:51:20,857] [pool-1-thread-2] Initializing /data/zstd-compressed/beads.tif: [testng] [2024-10-09 01:51:21,268] [pool-1-thread-3] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] [2024-10-09 01:51:21,680] [pool-1-thread-10] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-10-09 01:51:21,998] [pool-1-thread-9] Initializing /data/boguslaw/Arabidopsis.tiff: [testng] [2024-10-09 01:51:22,229] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z055.tif: [testng] [2024-10-09 01:51:22,454] [pool-1-thread-5] Initializing /data/wayne/screen-rgb.tiff: [testng] [2024-10-09 01:51:23,264] [pool-1-thread-1] Initializing /data/sub-resolution/Leica-3/Leica-3-subifds.tiff: [testng] [2024-10-09 01:51:25,303] [pool-1-thread-11] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-10-09 01:51:25,774] [pool-1-thread-12] Initializing /data/josiah/cell-Z4.C1.tiff: [testng] [2024-10-09 01:51:26,330] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z044.tif: [testng] [2024-10-09 01:51:27,450] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-10-09 01:51:27,884] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z017.tif: [testng] [2024-10-09 01:51:28,399] [pool-1-thread-2] Initializing /data/josiah/cell-Z26.C0.tiff: [testng] [2024-10-09 01:51:28,942] [pool-1-thread-10] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-10-09 01:51:29,555] [pool-1-thread-5] Initializing /data/samples/melissa/imagej-4gb/4gb-test&sizeX=1024&sizeY=1024&pixelType=uint16&sizeC=2050.fake: [testng] [2024-10-09 01:51:29,759] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z000.tif: [testng] [2024-10-09 01:51:30,099] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-10-09 01:51:31,483] [pool-1-thread-7] Initializing /data/josh/NESb_C2_TP2.tiff: [testng] [2024-10-09 01:51:32,829] [pool-1-thread-4] Initializing /data/ascb/CYT-29_BaintonGlycogenAB_4800.tif: [testng] [2024-10-09 01:51:35,366] [pool-1-thread-12] Initializing /data/josh/NESb_C2_TP4.tiff: [testng] [2024-10-09 01:51:35,855] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z008.tif: [testng] [2024-10-09 01:51:36,308] [pool-1-thread-8] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-10-09 01:51:37,014] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-10-09 01:51:37,590] [pool-1-thread-6] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-10-09 01:51:38,005] [pool-1-thread-3] Initializing /data/josiah/cell-Z2.C0.tiff: [testng] [2024-10-09 01:51:38,299] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2024-10-09 01:51:40,026] [pool-1-thread-5] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-10-09 01:51:41,593] [pool-1-thread-10] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] [2024-10-09 01:51:42,551] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z036.tif: [testng] [2024-10-09 01:51:43,270] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-10-09 01:51:43,798] [pool-1-thread-11] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] [2024-10-09 01:51:44,591] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 30 minutes 39 seconds Finished: SUCCESS