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Started by upstream project "BIOFORMATS-test-repo" build number 215 originally caused by: Started by upstream project "Trigger" build number 242 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins2224216138566841119.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34168_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:04:09,110 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:04:09,111 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 05:04:09,111 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:04:09,112 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:04:09,113 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:04:09,113 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:04:09,113 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:04:09,113 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:04:09,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:04:09,114 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:04:09,114 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:04:09,115 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:04:09,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:04:09,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:04:09,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:04:09,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:04:09,290 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:04:09,291 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:04:09,291 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:04:09,291 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:04:09,291 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 05:04:09,292 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 05:04:09,293 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 179 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-09 05:04:09,301] [main] java.version = 17.0.2 [testng] 05:04:09,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:04:09,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:09,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-09_05-04-09.log] [testng] 05:04:09,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-09 05:04:09,344] [main] testng.directory = /data [testng] [2024-10-09 05:04:09,345] [main] testng.configDirectory = /config [testng] [2024-10-09 05:04:09,353] [main] testng.multiplier = 1.0 [testng] [2024-10-09 05:04:09,353] [main] testng.in-memory = false [testng] [2024-10-09 05:04:09,354] [main] testng.allow-missing = false [testng] [2024-10-09 05:04:09,354] [main] user.language = en [testng] [2024-10-09 05:04:09,354] [main] user.country = ${user.country} [testng] [2024-10-09 05:04:09,354] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-09 05:07:15,404] [main] ---------------------------------------- [testng] [2024-10-09 05:07:15,404] [main] Total files: 15735 [testng] [2024-10-09 05:07:15,404] [main] Scan time: 186.05 s (11 ms/file) [testng] [2024-10-09 05:07:15,404] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-09 05:11:19,590] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 05:11:19,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:11:19,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:19,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-09_05-11-19.log] [testng] 05:11:19,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f65eb6e - End of configuration. [testng] [2024-10-09 05:11:21,249] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 05:11:21,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:11:21,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:21,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-09_05-11-21.log] [testng] 05:11:21,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@436f311f - End of configuration. [testng] [2024-10-09 05:11:23,444] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 05:11:23,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:11:23,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:23,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-09_05-11-23.log] [testng] 05:11:23,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@182bcf70 - End of configuration. [testng] [2024-10-09 05:11:24,892] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 05:11:24,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:11:24,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:24,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-09_05-11-24.log] [testng] 05:11:24,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d896bc0 - End of configuration. [testng] [2024-10-09 05:11:27,988] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 05:11:27,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:11:27,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:27,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-09_05-11-27.log] [testng] 05:11:27,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14d1d5bf - End of configuration. [testng] [2024-10-09 05:11:29,789] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 05:11:29,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:11:29,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:29,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-09_05-11-29.log] [testng] 05:11:29,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44a64882 - End of configuration. [testng] [2024-10-09 05:11:31,454] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 05:11:31,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:11:31,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:31,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-09_05-11-31.log] [testng] 05:11:31,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58d4e50b - End of configuration. [testng] [2024-10-09 05:11:33,015] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 05:11:33,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:11:33,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:33,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-09_05-11-33.log] [testng] 05:11:33,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60ff689c - End of configuration. [testng] [2024-10-09 05:11:34,662] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 05:11:34,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:11:34,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:34,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-09_05-11-34.log] [testng] 05:11:34,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@612c0260 - End of configuration. [testng] [2024-10-09 05:11:36,284] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 05:11:36,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:11:36,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:36,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-09_05-11-36.log] [testng] 05:11:36,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c266dbc - End of configuration. [testng] [2024-10-09 05:11:38,095] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 05:11:38,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:11:38,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:38,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-09_05-11-38.log] [testng] 05:11:38,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43f76850 - End of configuration. [testng] [2024-10-09 05:11:39,671] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 05:11:39,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:11:39,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:39,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-09_05-11-39.log] [testng] 05:11:39,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19a32b73 - End of configuration. [testng] [2024-10-09 05:12:08,833] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-10-09 05:12:19,393] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-10-09 05:12:23,387] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-10-09 05:12:58,161] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-10-09 05:15:09,019] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-10-09 05:15:12,713] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-10-09 05:15:23,566] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-10-09 05:15:43,080] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-10-09 05:16:27,439] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-10-09 05:16:54,724] [pool-1-thread-4] Initializing /data/converted/michel/a.tif: [testng] [2024-10-09 05:16:59,316] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-10-09 05:17:14,399] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-10-09 05:17:25,413] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-10-09 05:17:48,168] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-10-09 05:17:58,389] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-10-09 05:18:17,502] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-10-09 05:18:25,621] [pool-1-thread-12] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-10-09 05:18:27,056] [pool-1-thread-2] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-10-09 05:18:45,062] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-10-09 05:18:46,319] [pool-1-thread-6] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-10-09 05:19:17,142] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-10-09 05:19:39,047] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-10-09 05:19:41,218] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-10-09 05:19:58,942] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-10-09 05:20:24,113] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-10-09 05:20:31,781] [pool-1-thread-6] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-10-09 05:20:44,793] [pool-1-thread-12] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-10-09 05:20:52,206] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-10-09 05:21:03,929] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-10-09 05:21:29,531] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-10-09 05:21:54,008] [pool-1-thread-2] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-10-09 05:22:24,459] [pool-1-thread-2] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-10-09 05:22:44,524] [pool-1-thread-2] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-10-09 05:22:59,953] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-10-09 05:23:05,942] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-10-09 05:25:41,421] [pool-1-thread-7] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-10-09 05:26:19,037] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-10-09 05:27:16,000] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif: [testng] [2024-10-09 05:27:56,796] [pool-1-thread-1] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-10-09 05:27:59,158] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-10-09 05:28:50,121] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-10-09 05:29:02,935] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-10-09 05:29:29,627] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-10-09 05:29:42,508] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-10-09 05:30:05,401] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-10-09 05:32:10,488] [pool-1-thread-2] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-10-09 05:34:50,452] [pool-1-thread-7] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-10-09 05:37:50,149] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-10-09 05:38:50,632] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-10-09 05:40:10,006] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-10-09 05:41:41,422] [pool-1-thread-1] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-10-09 05:42:15,720] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-10-09 05:47:48,677] [pool-1-thread-10] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-10-09 05:48:29,653] [pool-1-thread-10] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-10-09 05:48:44,891] [pool-1-thread-3] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-10-09 05:49:14,084] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-10-09 05:49:59,892] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-10-09 05:52:26,943] [pool-1-thread-4] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-10-09 05:53:14,546] [pool-1-thread-8] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-10-09 05:53:18,148] [pool-1-thread-4] Initializing /data/scott/Slide133-04.tif: [testng] [2024-10-09 05:54:08,433] [pool-1-thread-4] Initializing /data/converted/converted/2chz.tif: [testng] [2024-10-09 05:54:25,951] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-10-09 05:57:15,656] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-10-09 05:59:46,868] [pool-1-thread-8] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-10-09 05:59:50,801] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-10-09 05:59:54,746] [pool-1-thread-4] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-10-09 06:01:12,333] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-10-09 06:01:20,275] [pool-1-thread-7] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-10-09 06:01:23,857] [pool-1-thread-5] Initializing /data/converted/michel/c.tif: [testng] [2024-10-09 06:02:13,526] [pool-1-thread-7] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-10-09 06:02:38,734] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-10-09 06:02:49,720] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-10-09 06:03:01,257] [pool-1-thread-10] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-10-09 06:04:05,451] [pool-1-thread-7] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-10-09 06:06:34,369] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-10-09 06:08:22,101] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-10-09 06:08:35,505] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-10-09 06:09:24,163] [pool-1-thread-3] Initializing /data/converted/dietmar/138.tif: [testng] [2024-10-09 06:11:00,083] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-10-09 06:12:28,188] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-10-09 06:15:49,227] [pool-1-thread-8] Initializing /data/converted/dietmar/137.tif: [testng] [2024-10-09 06:16:16,277] [pool-1-thread-4] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-10-09 06:16:32,545] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-10-09 06:17:49,403] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-10-09 06:19:22,077] [pool-1-thread-10] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-10-09 06:19:27,563] [pool-1-thread-4] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-10-09 06:20:00,289] [pool-1-thread-7] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-10-09 06:20:06,047] [pool-1-thread-1] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-10-09 06:20:23,010] [pool-1-thread-10] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-10-09 06:20:46,294] [pool-1-thread-4] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-10-09 06:20:49,852] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-10-09 06:21:12,521] [pool-1-thread-10] Initializing /data/scott/Slide133-11.tif: [testng] [2024-10-09 06:21:38,617] [pool-1-thread-3] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-10-09 06:21:44,163] [pool-1-thread-4] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-10-09 06:21:55,530] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-10-09 06:22:48,802] [pool-1-thread-4] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-10-09 06:23:24,232] [pool-1-thread-4] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-10-09 06:23:54,419] [pool-1-thread-2] Initializing /data/converted/michel/d.tif: [testng] [2024-10-09 06:24:05,113] [pool-1-thread-6] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-10-09 06:24:42,512] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-10-09 06:24:50,378] [pool-1-thread-6] Initializing /data/scott/Slide133-01.tif: [testng] [2024-10-09 06:25:19,581] [pool-1-thread-2] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-10-09 06:25:31,956] [pool-1-thread-7] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-10-09 06:25:34,487] [pool-1-thread-6] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-10-09 06:26:13,323] [pool-1-thread-6] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-10-09 06:26:45,433] [pool-1-thread-7] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-10-09 06:27:02,579] [pool-1-thread-6] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-10-09 06:27:21,336] [pool-1-thread-8] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-10-09 06:27:42,970] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-10-09 06:27:56,532] [pool-1-thread-9] Initializing /data/converted/nicolas/image.tif: [testng] [2024-10-09 06:28:09,439] [pool-1-thread-8] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-10-09 06:28:23,097] [pool-1-thread-8] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-10-09 06:28:33,232] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 07:17:37,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:17:37,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:17:37,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-09_07-17-37.log] [testng] 07:17:37,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@591ae9b9 - End of configuration. [testng] 07:22:43,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:22:43,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:22:43,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-09_07-22-43.log] [testng] 07:22:43,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5039de18 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 138 minutes 40 seconds Finished: SUCCESS