![[Jenkins]](/jenkins/static/f5fa13f0/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 215 originally caused by: Started by upstream project "Trigger" build number 242 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10800539452316536697.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34197_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 06:39:30,681 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:39:30,682 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 06:39:30,682 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:39:30,683 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:39:30,683 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:39:30,684 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:39:30,684 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:39:30,684 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:39:30,684 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:39:30,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:39:30,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:39:30,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:39:30,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:39:30,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:39:30,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:39:30,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:39:30,875 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:39:30,875 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:39:30,875 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:39:30,876 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:39:30,876 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 06:39:30,876 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 06:39:30,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-09 06:39:30,886] [main] java.version = 17.0.2 [testng] 06:39:30,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:39:30,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:39:30,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-09_06-39-30.log] [testng] 06:39:30,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-09 06:39:30,934] [main] testng.directory = /data [testng] [2024-10-09 06:39:30,935] [main] testng.configDirectory = /config [testng] [2024-10-09 06:39:30,944] [main] testng.multiplier = 1.0 [testng] [2024-10-09 06:39:30,946] [main] testng.in-memory = false [testng] [2024-10-09 06:39:30,946] [main] testng.allow-missing = false [testng] [2024-10-09 06:39:30,946] [main] user.language = en [testng] [2024-10-09 06:39:30,946] [main] user.country = ${user.country} [testng] [2024-10-09 06:39:30,946] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-09 06:39:38,686] [main] ---------------------------------------- [testng] [2024-10-09 06:39:38,686] [main] Total files: 22 [testng] [2024-10-09 06:39:38,686] [main] Scan time: 7.739 s (351 ms/file) [testng] [2024-10-09 06:39:38,686] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-09 06:40:03,357] [pool-1-thread-1] Initializing /data/converted/clown.ipw: [testng] 06:40:03,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:40:03,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:03,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-09_06-40-03.log] [testng] 06:40:03,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42edafc8 - End of configuration. [testng] [2024-10-09 06:40:03,966] [pool-1-thread-12] Initializing /data/converted/dub01.seq: [testng] 06:40:03,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:40:03,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:03,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-09_06-40-03.log] [testng] 06:40:03,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6cae32 - End of configuration. [testng] [2024-10-09 06:40:04,650] [pool-1-thread-11] Initializing /data/samples/FLDUAL.TIF: [testng] 06:40:04,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:40:04,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:04,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-09_06-40-04.log] [testng] 06:40:04,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f4df108 - End of configuration. [testng] [2024-10-09 06:40:06,277] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 06:40:06,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:40:06,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:06,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-09_06-40-06.log] [testng] 06:40:06,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c84b24c - End of configuration. [testng] [2024-10-09 06:40:06,876] [pool-1-thread-9] Initializing /data/converted/clown8c.seq: [testng] 06:40:06,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:40:06,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:06,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-09_06-40-06.log] [testng] 06:40:06,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cae3719 - End of configuration. [testng] [2024-10-09 06:40:07,524] [pool-1-thread-8] Initializing /data/xiuwen/head2.seq: [testng] 06:40:07,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:40:07,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:07,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-09_06-40-07.log] [testng] 06:40:07,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b6d87e0 - End of configuration. [testng] [2024-10-09 06:40:08,310] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw: [testng] 06:40:08,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:40:08,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:08,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-09_06-40-08.log] [testng] 06:40:08,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4acc8fc1 - End of configuration. [testng] [2024-10-09 06:40:09,002] [pool-1-thread-6] Initializing /data/converted/clown8c.tif: [testng] 06:40:09,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:40:09,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:09,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-09_06-40-09.log] [testng] 06:40:09,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@673bbc81 - End of configuration. [testng] [2024-10-09 06:40:10,534] [pool-1-thread-5] Initializing /data/converted/dub01.ipw: [testng] 06:40:10,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:40:10,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:10,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-09_06-40-10.log] [testng] 06:40:10,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22e571ae - End of configuration. [testng] [2024-10-09 06:40:11,136] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 06:40:11,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:40:11,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:11,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-09_06-40-11.log] [testng] 06:40:11,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2248a77e - End of configuration. [testng] [2024-10-09 06:40:11,794] [pool-1-thread-3] Initializing /data/converted/dub01.pic: [testng] 06:40:11,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:40:11,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:11,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-09_06-40-11.log] [testng] 06:40:11,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ad6c9be - End of configuration. [testng] [2024-10-09 06:40:12,452] [pool-1-thread-2] Initializing /data/converted/mitosis-test.seq: [testng] 06:40:12,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:40:12,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:12,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-09_06-40-12.log] [testng] 06:40:12,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1469858c - End of configuration. [testng] [2024-10-09 06:40:19,359] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-10-09 06:40:20,965] [pool-1-thread-9] Initializing /data/converted/clown.tif: [testng] [2024-10-09 06:40:21,589] [pool-1-thread-7] Initializing /data/samples/PROBE.TIF: [testng] [2024-10-09 06:40:22,342] [pool-1-thread-3] Initializing /data/converted/clown.seq: [testng] [2024-10-09 06:40:23,009] [pool-1-thread-2] Initializing /data/samples/HEART.SEQ: [testng] [2024-10-09 06:40:23,654] [pool-1-thread-5] Initializing /data/converted/mitosis-test.tif: [testng] [2024-10-09 06:40:25,301] [pool-1-thread-12] Initializing /data/converted/clown8c.ipw: [testng] [2024-10-09 06:40:25,912] [pool-1-thread-10] Initializing /data/alex/AFAset0003.ips: [testng] [2024-10-09 06:40:26,621] [pool-1-thread-4] Initializing /data/samples/TISSUE.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 36 seconds Finished: SUCCESS