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Started by upstream project "BIOFORMATS-test-repo" build number 216 originally caused by: Started by upstream project "Trigger" build number 243 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins5269269595050308019.sh + '[' lim = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34218_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:25:09,446 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:25:09,447 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:25:09,447 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:25:09,448 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:25:09,449 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:25:09,449 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:25:09,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:25:09,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:25:09,450 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:25:09,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:25:09,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:25:09,451 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:25:09,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:25:09,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:25:09,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:25:09,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:25:09,651 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:25:09,651 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:25:09,651 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:25:09,652 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:25:09,652 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:25:09,652 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:25:09,653 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-10 01:25:09,662] [main] java.version = 21 [testng] 01:25:09,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:25:09,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:09,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-10_01-25-09.log] [testng] 01:25:09,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-10 01:25:09,735] [main] testng.directory = /data [testng] [2024-10-10 01:25:09,735] [main] testng.configDirectory = /config [testng] [2024-10-10 01:25:09,744] [main] testng.multiplier = 1.0 [testng] [2024-10-10 01:25:09,745] [main] testng.in-memory = false [testng] [2024-10-10 01:25:09,746] [main] testng.allow-missing = false [testng] [2024-10-10 01:25:09,746] [main] user.language = en [testng] [2024-10-10 01:25:09,746] [main] user.country = ${user.country} [testng] [2024-10-10 01:25:09,746] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-10 01:25:11,667] [main] ---------------------------------------- [testng] [2024-10-10 01:25:11,667] [main] Total files: 21 [testng] [2024-10-10 01:25:11,667] [main] Scan time: 1.921 s (91 ms/file) [testng] [2024-10-10 01:25:11,668] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-10 01:25:23,151] [pool-1-thread-1] Initializing /data/venu/Kontrolle0009.lim: [testng] 01:25:23,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:25:23,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:23,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-10_01-25-23.log] [testng] 01:25:23,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72414bb4 - End of configuration. [testng] [2024-10-10 01:25:23,609] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 01:25:23,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:25:23,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:23,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-10_01-25-23.log] [testng] 01:25:23,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@690419a6 - End of configuration. [testng] [2024-10-10 01:25:23,999] [pool-1-thread-11] Initializing /data/venu/Kontrolle0017.lim: [testng] 01:25:24,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:25:24,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:24,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-10_01-25-24.log] [testng] 01:25:24,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aeb3ed1 - End of configuration. [testng] [2024-10-10 01:25:24,515] [pool-1-thread-10] Initializing /data/venu/Kontrolle0007.lim: [testng] 01:25:24,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:25:24,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:24,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-10_01-25-24.log] [testng] 01:25:24,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@140b4a28 - End of configuration. [testng] [2024-10-10 01:25:25,078] [pool-1-thread-9] Initializing /data/venu/Kontrolle0013.lim: [testng] 01:25:25,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:25:25,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:25,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-10_01-25-25.log] [testng] 01:25:25,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f4bb610 - End of configuration. [testng] [2024-10-10 01:25:25,581] [pool-1-thread-8] Initializing /data/venu/Kontrolle0012.lim: [testng] 01:25:25,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:25:25,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:25,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-10_01-25-25.log] [testng] 01:25:25,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@323935ce - End of configuration. [testng] [2024-10-10 01:25:25,989] [pool-1-thread-7] Initializing /data/venu/Kontrolle0018.lim: [testng] 01:25:25,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:25:25,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:25,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-10_01-25-25.log] [testng] 01:25:25,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ea901f - End of configuration. [testng] [2024-10-10 01:25:26,448] [pool-1-thread-6] Initializing /data/venu/Kontrolle0002.lim: [testng] 01:25:26,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:25:26,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:26,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-10_01-25-26.log] [testng] 01:25:26,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19b5ff60 - End of configuration. [testng] [2024-10-10 01:25:26,884] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim: [testng] 01:25:26,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:25:26,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:26,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-10_01-25-26.log] [testng] 01:25:26,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@420a4eee - End of configuration. [testng] [2024-10-10 01:25:27,313] [pool-1-thread-4] Initializing /data/venu/Kontrolle0019.lim: [testng] 01:25:27,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:25:27,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:27,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-10_01-25-27.log] [testng] 01:25:27,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@281dd3e8 - End of configuration. [testng] [2024-10-10 01:25:27,669] [pool-1-thread-3] Initializing /data/venu/Kontrolle0003.lim: [testng] 01:25:27,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:25:27,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:27,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-10_01-25-27.log] [testng] 01:25:27,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50413c65 - End of configuration. [testng] [2024-10-10 01:25:28,057] [pool-1-thread-2] Initializing /data/venu/Kontrolle0014.lim: [testng] 01:25:28,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:28,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:28,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-10_01-25-28.log] [testng] 01:25:28,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b7c7325 - End of configuration. [testng] [2024-10-10 01:25:34,919] [pool-1-thread-3] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-10-10 01:25:35,404] [pool-1-thread-7] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-10-10 01:25:35,818] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] [2024-10-10 01:25:36,273] [pool-1-thread-5] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-10-10 01:25:36,752] [pool-1-thread-4] Initializing /data/venu/Kontrolle0016.lim: [testng] [2024-10-10 01:25:37,201] [pool-1-thread-9] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-10-10 01:25:37,640] [pool-1-thread-11] Initializing /data/venu/Kontrolle0001.lim: [testng] [2024-10-10 01:25:38,006] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 42 seconds Finished: SUCCESS