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Started by upstream project "BIOFORMATS-test-repo" build number 216 originally caused by: Started by upstream project "Trigger" build number 243 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins15168802071314248601.sh + '[' specs = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34230_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:35:27,137 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:35:27,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:35:27,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:35:27,140 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:35:27,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:35:27,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:35:27,141 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:35:27,141 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:35:27,141 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:35:27,142 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:35:27,142 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:35:27,142 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:35:27,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:35:27,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:35:27,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:35:27,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:35:27,329 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:35:27,329 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:35:27,329 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:35:27,329 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:35:27,329 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:35:27,330 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:35:27,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-10 01:35:27,339] [main] java.version = 21 [testng] 01:35:27,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:35:27,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:35:27,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-10_01-35-27.log] [testng] 01:35:27,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-10 01:35:27,387] [main] testng.directory = /data [testng] [2024-10-10 01:35:27,387] [main] testng.configDirectory = /config [testng] [2024-10-10 01:35:27,395] [main] testng.multiplier = 1.0 [testng] [2024-10-10 01:35:27,396] [main] testng.in-memory = false [testng] [2024-10-10 01:35:27,396] [main] testng.allow-missing = false [testng] [2024-10-10 01:35:27,396] [main] user.language = en [testng] [2024-10-10 01:35:27,396] [main] user.country = ${user.country} [testng] [2024-10-10 01:35:27,396] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-10 01:43:32,422] [main] ---------------------------------------- [testng] [2024-10-10 01:43:32,422] [main] Total files: 226 [testng] [2024-10-10 01:43:32,422] [main] Scan time: 485.026 s (2146 ms/file) [testng] [2024-10-10 01:43:32,423] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-10 01:49:47,091] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 01:49:47,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:49:47,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:47,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-10_01-49-47.log] [testng] 01:49:47,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d97932b - End of configuration. [testng] [2024-10-10 01:49:47,460] [pool-1-thread-12] Initializing /data/iplab/3t3 Cell.IPL: [testng] 01:49:47,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:49:47,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:47,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-10_01-49-47.log] [testng] 01:49:47,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@753ed5f9 - End of configuration. [testng] [2024-10-10 01:49:47,518] [pool-1-thread-11] Initializing /data/iplab/Blend_Final.IPL: [testng] 01:49:47,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:49:47,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:47,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-10_01-49-47.log] [testng] 01:49:47,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fa329f9 - End of configuration. [testng] [2024-10-10 01:49:47,644] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:49:47,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:49:47,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:47,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-10_01-49-47.log] [testng] 01:49:47,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8d9f03 - End of configuration. [testng] [2024-10-10 01:49:48,071] [pool-1-thread-9] Initializing /data/iplab/Color Image.IPL: [testng] 01:49:48,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:49:48,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:48,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-10_01-49-48.log] [testng] 01:49:48,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@409059a8 - End of configuration. [testng] [2024-10-10 01:49:48,130] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] 01:49:48,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:49:48,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:48,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-10_01-49-48.log] [testng] 01:49:48,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f0b629e - End of configuration. [testng] [2024-10-10 01:49:48,668] [pool-1-thread-7] Initializing /data/iplab/Blend_DIC.IPL: [testng] 01:49:48,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:49:48,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:48,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-10_01-49-48.log] [testng] 01:49:48,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f07fc19 - End of configuration. [testng] [2024-10-10 01:49:48,769] [pool-1-thread-6] Initializing /data/iplab/Blend_Dapi.IPL: [testng] 01:49:48,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:49:48,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:48,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-10_01-49-48.log] [testng] 01:49:48,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2404a842 - End of configuration. [testng] [2024-10-10 01:49:48,834] [pool-1-thread-5] Initializing /data/iplab/16Bit XRay.IPL: [testng] 01:49:48,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:49:48,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:48,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-10_01-49-48.log] [testng] 01:49:48,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@436c8730 - End of configuration. [testng] [2024-10-10 01:49:49,020] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL: [testng] 01:49:49,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:49:49,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:49,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-10_01-49-49.log] [testng] 01:49:49,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@602431cf - End of configuration. [testng] [2024-10-10 01:49:49,082] [pool-1-thread-3] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] 01:49:49,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:49:49,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:49,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-10_01-49-49.log] [testng] 01:49:49,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ee4d5 - End of configuration. [testng] [2024-10-10 01:49:49,168] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] 01:49:49,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:49:49,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:49,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-10_01-49-49.log] [testng] 01:49:49,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b9276d7 - End of configuration. [testng] [2024-10-10 01:49:52,458] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-10-10 01:49:52,884] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] [2024-10-10 01:49:53,405] [pool-1-thread-4] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-10-10 01:49:53,515] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2024-10-10 01:49:53,602] [pool-1-thread-11] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-10-10 01:49:54,075] [pool-1-thread-7] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-10-10 01:49:54,143] [pool-1-thread-6] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-10-10 01:49:54,276] [pool-1-thread-3] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-10-10 01:49:55,704] [pool-1-thread-1] Initializing /data/iplab/Blend_Fitc.IPL: [testng] [2024-10-10 01:49:56,532] [pool-1-thread-4] Initializing /data/fluoview/Sample_XT.tif: [testng] [2024-10-10 01:49:57,446] [pool-1-thread-3] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-10-10 01:49:58,247] [pool-1-thread-6] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] [2024-10-10 01:49:59,599] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-10-10 01:50:00,848] [pool-1-thread-7] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-10-10 01:50:03,289] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-10-10 01:50:06,422] [pool-1-thread-1] Initializing /data/fluoview/SpineAnimation.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 minutes 49 seconds Finished: SUCCESS